Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0794 ATGGCAACTTCATTAACACAAGATCAGATTGCTAAATTTCGGGAAGCTTTTTCTGTAATTGACAAGGACTCTGATGGATTCATTACTTTGGAAGAGCTTATAGCAATTTTACAACAATTAGATGGAAATTCAACAAAAGAAGAAGTCCAAGAAATGATTAGTGAAGCTGATATTGATGGAAATGGGATAATAAATTTTGAAGAGTTCTTAACTTTTATGGGAAGGAAAATCAAGGAAAATCAGGCTGAGGAGTTAAAAGATGCATTTAAAGTGTTTGATAGAAATAATGATGGATACATATCAGCCACTGAGCTGAGACAAGTGATGATGAAAATGGGAGAGAGGCTAACAGATGAAGAAGCTGAAGAAATGATAAGAGAGGCAGATTTGGATGGTGATGGTCAAGTCAGCTATGAAGAATTTGCAAGAATGATGTTGCTCAATTGA 447 0.349 MATSLTQDQIAKFREAFSVIDKDSDGFITLEELIAILQQLDGNSTKEEVQEMISEADIDGNGIINFEEFLTFMGRKIKENQAEELKDAFKVFDRNNDGYISATELRQVMMKMGERLTDEEAEEMIREADLDGDGQVSYEEFARMMLLN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0794 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Ahy12g0794 148 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Ahy12g0794 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Ahy12g0794 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Ahy12g0794 148 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 146 - -
Ahy12g0794 148 Gene3D - 77 148 - -
Ahy12g0794 148 Gene3D - 1 76 - -
Ahy12g0794 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Ahy12g0794 148 CDD EFh 84 145 IPR002048 GO:0005509
Ahy12g0794 148 CDD EFh 12 73 IPR002048 GO:0005509
Ahy12g0794 148 SUPERFAMILY EF-hand 1 147 IPR011992 -
Ahy12g0794 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Ahy12g0794 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Ahy12g0794 148 SMART efh_1 84 112 IPR002048 GO:0005509
Ahy12g0794 148 SMART efh_1 12 40 IPR002048 GO:0005509
Ahy12g0794 148 SMART efh_1 48 76 IPR002048 GO:0005509
Ahy12g0794 148 SMART efh_1 120 148 IPR002048 GO:0005509
Ahy12g0794 148 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
Ahy12g0794 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Ahy12g0794 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Ahy12g0794 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0794 Ahy-Chr12 14180821 14183089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0794 13 76 EF-hand Containing Proteins AT3G56800 51.562 3.75e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0794 K02183 K13448 gmx:100778454 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0794 12 14180821 14183089 Ahy2g0663 2 10717599 10719597 hybridization
Ahy16g0175 16 1854982 1856918 Ahy12g0794 12 14180821 14183089 PCT
Ahy6g1150 6 16811088 16812692 Ahy12g0794 12 14180821 14183089 PCT
Ahy12g0794 12 14180821 14183089 Ahy16g0175 16 1854982 1856918 PCT
Ahy12g0794 12 14180821 14183089 Ahy6g1150 6 16811088 16812692 PCT