Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0349 ATGCCAGGACTATTCGCCGCTAGAACCCCATCAAAAACGCAGTCGTTTCGTGATTTCCTCATTGAACCGCCGGAAAACGAACCCTCCAGCGAGCTGAACCCTTCTCCGCCGCCGACAGCGAAACGAACCACCATGAGAACGCCGGATAAACTCGCCGTCGACGACAACGATACCTCCCTTGACAACCCAGACATGGGCCCGTTCCTTCTGAAGATGGCCCGAGACACTGTTCATTCGGGTCAGGACCCGAAGAAAGCCCTAGAATACGCGATTCGGGCCTCCGAGGATTTCGAGCGGGTGTCGGGTCCAAGTTCGGATCTTGCCACGTGTCTCCACGTGGTTGCTGCAATATTGAGCGGGTTAGGGCGGTTAGAGGAAGCGGTCGAGACTCTGGAGCGGTCAATTCTGGTGTCGGATAGTGCAGAAAACGGGTCGGGTCATGCAATGGTGAAGTTTTCAGGGTTGATGCAGTTAGGGGATACTTATTCAATGATTGGGCAGTTGGATAGGTCCATTGAGTGTTATGAATCGGGTCTGAAAATCCAAGTTGAGGCTTTGGGTAGATCTGACCCGAGAGTTGCTGAGACTTGCAGATACTTAGCTGAGGCGCATGTTCAAGCCATGCAATTTGATGAGGCTGAGAAATTCTGCAAGAAGACCCTTGAGATTCATAGGGAGCATTGCTCGCCAGCTTCTCTTACAGAAGCAGCCGATAGGCGTCTTATGGCCCTCATATGCGAGGCGAAGGGAGAATACGAGCCGGCACTTGAACATCTTGTCCTTGCTAGTATGTCGATGATTGCCCATGGGCAGGACAATGAGGTTGCAGCGATTGACGTTAGCATTGGCGATATTTACTTGTCGCTCTGTCGTTTTGACGAGGCTATTTTCGCCTACCAAAAAGCGCTAACAGTGTTCAAAACCACCAAAGGTGAAAGTCACAGTTCCATAGCATTAGTGTACATTCGCCTTGCCGACCTCTACTACAAGACGGGAAAATTGCGCGAGTCAAAATCCTATTGTGAAAATGCGTTAAGAATATACTCCAAACCTGTACCTGGAACTACCCCAGGAGAAATTGCGAGTGGATTGAATGAAATCTCTGCCATCTATGAAGCTTTAAACGAGCCGGAGGAGGCACTGAAGCTCCTCCAGAAGGCAGTGAAGTTATTGGAGAATATCCCCGGACAATATAGGACAGTGGCAGGAATAGAATCTCAAATAGGAGTAATCTTCTACATGGTTGGGAGATACAGTGATGCATGGAAATCTTTTGCGAGTGCCATTGCAAAGCTTAGAGCAAGCGGAGAGAGGAAATCGGCGTTCTTCGGATTTGTGTTGAACCAGATGGGCCTAGCATGTGTGCAACTGTATAAAATTGCGGAAGCTGCCACACATTTCGAAGAAGCAAGAGAGATATTGGAGCAGGAGTGTGGAACATACCATTTGGACACTCTTGGAGTTTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAGGATGCCATTGAGATATTGGAGTACATACTTAAGATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAGGAAAAGACTGTTTGAGCTTTTGAAAGAGGCAGGAAGAGTTAGAAACAAGAAGGCAAAATCACTTGAAAATCTTATAGAATCCAAGTCTTTCAAGATGAAGAATGAAGGGAAGAAGAAAAGGGTTGCATTTGGTTTGAGAACTTGA 1737 0.4738 MPGLFAARTPSKTQSFRDFLIEPPENEPSSELNPSPPPTAKRTTMRTPDKLAVDDNDTSLDNPDMGPFLLKMARDTVHSGQDPKKALEYAIRASEDFERVSGPSSDLATCLHVVAAILSGLGRLEEAVETLERSILVSDSAENGSGHAMVKFSGLMQLGDTYSMIGQLDRSIECYESGLKIQVEALGRSDPRVAETCRYLAEAHVQAMQFDEAEKFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGEYEPALEHLVLASMSMIAHGQDNEVAAIDVSIGDIYLSLCRFDEAIFAYQKALTVFKTTKGESHSSIALVYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTPGEIASGLNEISAIYEALNEPEEALKLLQKAVKLLENIPGQYRTVAGIESQIGVIFYMVGRYSDAWKSFASAIAKLRASGERKSAFFGFVLNQMGLACVQLYKIAEAATHFEEAREILEQECGTYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDERKRLFELLKEAGRVRNKKAKSLENLIESKSFKMKNEGKKKRVAFGLRT* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0349 578 Pfam MalT-like TPR region 113 262 IPR041617 -
Ahy12g0349 578 Gene3D Tetratricopeptide repeat domain 263 443 IPR011990 GO:0005515
Ahy12g0349 578 SUPERFAMILY TPR-like 404 543 IPR011990 GO:0005515
Ahy12g0349 578 SMART tpr_5 361 394 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 402 435 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 194 227 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 152 185 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 276 309 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 486 519 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 318 351 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 444 477 IPR019734 GO:0005515
Ahy12g0349 578 SMART tpr_5 108 141 IPR019734 GO:0005515
Ahy12g0349 578 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 24 577 - -
Ahy12g0349 578 Gene3D Tetratricopeptide repeat domain 444 570 IPR011990 GO:0005515
Ahy12g0349 578 ProSiteProfiles TPR repeat profile. 361 394 IPR019734 GO:0005515
Ahy12g0349 578 SUPERFAMILY TPR-like 154 347 IPR011990 GO:0005515
Ahy12g0349 578 Gene3D Tetratricopeptide repeat domain 68 262 IPR011990 GO:0005515
Ahy12g0349 578 MobiDBLite consensus disorder prediction 1 63 - -
Ahy12g0349 578 SUPERFAMILY TPR-like 63 140 IPR011990 GO:0005515
Ahy12g0349 578 Pfam Tetratricopeptide repeat 447 518 - -
Ahy12g0349 578 Pfam Tetratricopeptide repeat 275 349 - -
Ahy12g0349 578 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 24 577 - -
Ahy12g0349 578 ProSiteProfiles TPR repeat profile. 276 309 IPR019734 GO:0005515
Ahy12g0349 578 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0349 Ahy-Chr12 5039725 5043899 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0349 - - gmx:100794697 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0349 12 5039725 5043899 Ahy12g0349 12 5039725 5043899 ECH