Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0316 ATGGCATCTTCCATCATCTCACAGTACCATAGCCTTAAAGATAATCATAATCCATTATCTTTACATCATCTTGATCCTTATTATGTTCATAACAACACACAAATCCTTAGAAGCCATTCATCATCCACTTCAATTTCTGTTGGAGTGTTAGATAAGAAGCCTCATTTTTCTGATACCCTATTTGCCCCACCAAACCTTTCTCCATGCTTTCACTTTTTGGATGAATTGTGTGAGATAAGGGATTTGAATTCTGTGAGGGAACTACATGCACAGATGCTGAAAATGCCAAGAAACAAAGGTGGTAGTAGTACCTTGGCCACAATAGATGAAACCGTTATGAGATACTATTTGGAATTTGATGATTTTGTGTCTGCAATAAAGGTTTTCTTTGTTGGTTTATCGAGGAATTATCTTCTATGGAACTCTTTCTTGGAGAAATTTGGAAGTTTTGGAGGTGACCCTTATGAGATTCTTGCTGTATTTGGTGAACTGCATAAGAAAGGTGTTGAATTTGATAGCATAGCTTTCACTGTTGTTCTGAAAATTTGCTTGGTTTTGATGGATTTGAAGGTTGGATTAGAGATTCATGCTTGTTTGATAAAGAGAGGATTCCATTTTGATGTGCATTTGTGTTGTGCATTGATCAATTTGTATGAGAAGTGCTGGGGTGTAGATAGAGCATACCAAGTGTTTGATGAAGCGCCCCAGAAAGAAGATTTCTTGTGGAACACGATAATTATGGCGAGCCTGAGGAGTGAGAAGTGGTTTGATGGCTTAGAATTGTTTCGCGGCATGCAGTTATCTTCGGCTAAAGCCACCGGTGGCACCATTGTCAAGGTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAACGAAGGGAAACAAATTCATGGATATGTTTTAAGGCGGGGATTAGTGTCGAACATGTCCATTAGCAATTCCATAATTAGCATGTACTCTAAGAATCATAGTCTTAAAATGGCTAGAACATTTTTTGATTCAATGGAGGATTATAACTTGTCATCTTGGAACTCAATTATTTCATGTTATGCTGGTTATGGCAACTTGGAAGATGCCCTGGATATCTTCCAAGAAATGGAAGCTTCCGGCATTAAACCAGACATTATAACTTGGAATTCTCTTATGTCAGGTCTTCTTCTTCAGGGTTCATACAAAGCTGTTCTGGCCAATTTCCGGAGCCTGCAAGTCGAAGGCTTGAAGCCGGATTCGGGCTCGGTAACTAGTGCACTACAAGCAATTATTGAATTGGGTATCTTCAACTTAGGGAAAGAAATTCATGGTTACATATTGAGAAACAAGCTTGATCATGATGTTTATGTTTGCACTTCATTGATGGATATGTATATCAAGAATGATGAGTTACATAAAGCTCAAAAAGTGTTCCATCGCACAAAGAACAAAAACATCTGTGCTTGGAATTCATTGATATCAGGGTACTCCTTCAAGGGACAGTTTAGTGATGCTGAAGAACTATTGAACCAGATGGAGAAAGAAAGTATAAAACCTGATATAGTTACATGGAACAGTTTGATTTCTGGTTATTCAATGCATGGCCGAAGCGAGGAAGCTATGGATGTGATTAATAGGATGAAGAGTTCAGGATTTTCACCTAATGTGGTTTCATGGACTGCAATGGTATCCGGCAGTTCTCGGAACAAAAATCATATGGATTCCATCCGGTTTTTCGGCCAAATGCAAGCACAAAATGTAAGGCCTAATTCTACTACTATTTGCAGCTTACTTCGAGCTTGCTCCGGCCAGTCGCTTCTAAAGAAAGGCGAAGAGATACACTGCCTCTGCATAAGACATGGATTTATAGAGGATATGTACATAGCCACAGCACTCATTGACATGTATAGCAAGGCAGGGAAGTTGAAAGTAGCATGCGAAATTTTCGGAAGAATAGAGGGGAAAACACTTCCTTGTTGGAACTGTATGATGATGGGATATGCTATTCACGGCCACGGTGAAGAAGTAATTTTTCTTTTTAACAAAATGCTCAAAACTGGTATCATCCCTGATTCTATTACCTTCACAGCTCTTCTATCCGGCTGCAAGAATTCAGGTCGAATCAATGATGGATGGAAGTACTTTGACAGTATGAGTACAGATTACAACATTGTTCCAACAATTGAGCACTATTCTTGCATGGTGGACCTTCTTGGAAAATCTGGTTTTCTTGACGAAGCTCTGCATTTCATCCAAACTATGCCAGTAAATCCGGATGCTAGTATCTGGGGAGCTCTTCTTGCATCCTGCCGAATTCACAAAAACATTATGCTAGCCGAGACTGCGTCGAGGAATCTGTTCAAGCTAGAGCCTTATAATTCTGCCAACTATGTTATAATGATGAATATATATTCGGCTTTAGGCAAATGGGACGACGCGCAGCGCCTTAGAGACACAATGGTTGCTGCAGGGTTGAAAAGCCCTGGTGTTTGGAGCTGGATACAGGTAAATCAAACTACTCATGTGTTCTCTACAGAAGGGAAATCACATCAAGAAGAAGGCGAAATATATTTCGAATTATATCAGTTAGTTTCTAAGGTGAAGAAGCTAGGATATGTGCCTGATATAAGTTGTGTGTATCAAAATATTGACAACAATGAAAAGGAGAAGGTTCTTCTCAGTCACACTGAGAAGCTAGCTATCACATATGGACTCATGAAAACAAAAGGTGGATCACCTATCAGGGTAGTTAAGAACACAAGAATTTGTCAGGATTGTCACACATTAGCCAAGTACATTTCTTCGGCCGAAAATCGCGAGATTTTGCTCCGAGATGGCGGCCGTTTTCACCATTTTGTGAATGGAAAATGCTCCTGTAATGGTTGTTGGTAA 2862 0.3976 MASSIISQYHSLKDNHNPLSLHHLDPYYVHNNTQILRSHSSSTSISVGVLDKKPHFSDTLFAPPNLSPCFHFLDELCEIRDLNSVRELHAQMLKMPRNKGGSSTLATIDETVMRYYLEFDDFVSAIKVFFVGLSRNYLLWNSFLEKFGSFGGDPYEILAVFGELHKKGVEFDSIAFTVVLKICLVLMDLKVGLEIHACLIKRGFHFDVHLCCALINLYEKCWGVDRAYQVFDEAPQKEDFLWNTIIMASLRSEKWFDGLELFRGMQLSSAKATGGTIVKVLQACGKLRALNEGKQIHGYVLRRGLVSNMSISNSIISMYSKNHSLKMARTFFDSMEDYNLSSWNSIISCYAGYGNLEDALDIFQEMEASGIKPDIITWNSLMSGLLLQGSYKAVLANFRSLQVEGLKPDSGSVTSALQAIIELGIFNLGKEIHGYILRNKLDHDVYVCTSLMDMYIKNDELHKAQKVFHRTKNKNICAWNSLISGYSFKGQFSDAEELLNQMEKESIKPDIVTWNSLISGYSMHGRSEEAMDVINRMKSSGFSPNVVSWTAMVSGSSRNKNHMDSIRFFGQMQAQNVRPNSTTICSLLRACSGQSLLKKGEEIHCLCIRHGFIEDMYIATALIDMYSKAGKLKVACEIFGRIEGKTLPCWNCMMMGYAIHGHGEEVIFLFNKMLKTGIIPDSITFTALLSGCKNSGRINDGWKYFDSMSTDYNIVPTIEHYSCMVDLLGKSGFLDEALHFIQTMPVNPDASIWGALLASCRIHKNIMLAETASRNLFKLEPYNSANYVIMMNIYSALGKWDDAQRLRDTMVAAGLKSPGVWSWIQVNQTTHVFSTEGKSHQEEGEIYFELYQLVSKVKKLGYVPDISCVYQNIDNNEKEKVLLSHTEKLAITYGLMKTKGGSPIRVVKNTRICQDCHTLAKYISSAENREILLRDGGRFHHFVNGKCSCNGCW* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 711 IPR002885 -
Ahy12g0316 953 Pfam DYW family of nucleic acid deaminases 861 953 IPR032867 GO:0008270
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Ahy12g0316 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 134 237 - -
Ahy12g0316 953 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 236 941 - -
Ahy12g0316 953 Gene3D Tetratricopeptide repeat domain 594 695 IPR011990 GO:0005515
Ahy12g0316 953 Gene3D Tetratricopeptide repeat domain 288 424 IPR011990 GO:0005515
Ahy12g0316 953 Gene3D Tetratricopeptide repeat domain 696 842 IPR011990 GO:0005515
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 478 506 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 620 644 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 720 744 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 313 339 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 241 266 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat 447 476 IPR002885 -
Ahy12g0316 953 Pfam E motif 763 825 IPR046848 -
Ahy12g0316 953 Gene3D Tetratricopeptide repeat domain 110 287 IPR011990 GO:0005515
Ahy12g0316 953 Gene3D Tetratricopeptide repeat domain 472 565 IPR011990 GO:0005515
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Ahy12g0316 953 PANTHER OS05G0586900 PROTEIN 134 237 - -
Ahy12g0316 953 PANTHER OS05G0586900 PROTEIN 236 941 - -
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 649 682 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 547 580 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 683 717 IPR002885 -
Ahy12g0316 953 TIGRFAM PPR: pentatricopeptide repeat domain 512 546 IPR002885 -
Ahy12g0316 953 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat family 509 555 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat family 340 385 IPR002885 -
Ahy12g0316 953 Pfam PPR repeat family 649 692 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0316 Ahy-Chr12 4479281 4482861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0316 151 953 Glycoside Hydrolase AT3G49170 29.812 4.94e-134 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0316 - - adu:107463433 1815.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0316 12 4479281 4482861 Ahy12g0316 12 4479281 4482861 ECH