Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2117 ATGAGCGTGGAAGATCTTCCTCGGAAGGAGGTGAACGTGCTGAAGGGGCACGAGGGCGCCGTACTTTCCGCAAGGTTCAACGCTGATGGCAACTACTGCCTCAGCTGTGGCAAAGACCGCACCATACGCCTCTGGAATCCCCACCGCGGCATCCACATCAAGACCTACAAATCCCACGGCCGTGAAGTCCGCGATGTCCATGTCACTTCGGACAACTCCAAGCTATGTTCGTGTGGTGGAGATCGCCAGATTTTTTATTGGGATGTAGCTACAGGCCGTGTAATTCGAAAGTTCCGTGGTCATGACGGTGAGGTCAATGCTGTGAAATTCAATGAGTATTCCTCTGTGGTAGTATCAGCTGGATATGATCAATCCTTGCGTTCTTGGGACTGCAGATCCCACAGCACCGAGCCTATGCAGATTATTGACACATTTTCAGATAGTGTCATGTTTGTTTGCTTAACAAATACTGAAATCATTGGAGGAAGTGACGATGGAACTGTTCGAACCTTTGACATTCGCATTGGCAGAGAAACATCTGATAACTTGGGGCAACCGGTTAACTGCATATCCATGTCAAATGATGGTAACTGCATTCTAGCTGGTTGTCTCGACTCTACTCTGCGGCTTTTGGACCGATCTACAGGGGAGTCATTGCAAGAATATAAAGGGCACACTAATAAGTCATTTAAATTGGATTGCTGCCTTACCAATACGGATGCTCATGTAACTGCTGGCTCTGAGGATGGCTACATCTATTTTTGGGATCTTGTAGATGCATCGGTCGTGTCAAGATTCAGGGCTCATAACTCAGTGGTAACAAGCGTAAGTTATCACCCAAAGGAGAATTGCATGGTAACTGCTTCTGTGGATGGCACCATTCGAGTGTGGAAGACATAG 900 0.4744 MSVEDLPRKEVNVLKGHEGAVLSARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTSDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNAVKFNEYSSVVVSAGYDQSLRSWDCRSHSTEPMQIIDTFSDSVMFVCLTNTEIIGGSDDGTVRTFDIRIGRETSDNLGQPVNCISMSNDGNCILAGCLDSTLRLLDRSTGESLQEYKGHTNKSFKLDCCLTNTDAHVTAGSEDGYIYFWDLVDASVVSRFRAHNSVVTSVSYHPKENCMVTASVDGTIRVWKT* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2117 299 SUPERFAMILY WD40 repeat-like 6 298 IPR036322 GO:0005515
Ahy11g2117 299 Pfam VID27 C-terminal WD40-like domain 145 233 IPR013863 -
Ahy11g2117 299 Gene3D - 5 299 IPR015943 GO:0005515
Ahy11g2117 299 Pfam WD domain, G-beta repeat 93 130 IPR001680 GO:0005515
Ahy11g2117 299 Pfam WD domain, G-beta repeat 9 46 IPR001680 GO:0005515
Ahy11g2117 299 Pfam WD domain, G-beta repeat 52 88 IPR001680 GO:0005515
Ahy11g2117 299 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Ahy11g2117 299 CDD WD40 10 298 - -
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Ahy11g2117 299 PANTHER WD40 REPEAT PROTEIN 6 298 - -
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 299 IPR001680 GO:0005515
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 46 - -
Ahy11g2117 299 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 91 130 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 259 298 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 49 88 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 176 212 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 215 256 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 135 172 IPR001680 GO:0005515
Ahy11g2117 299 SMART WD40_4 7 46 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2117 Ahy-Chr11 132882187 132884982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2117 95 297 Miscellaneous Gene Families AT5G08390 26.540 1.35e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2117 K13124 - gmx:100795039 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2117 11 132882187 132884982 Ahy11g2117 11 132882187 132884982 ECH