Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2018 ATGGATTCGAACGCCATGGCACAACTCCAAAGACCTTCAACCCAAACCCCAACCCTGCTCGATTCTCTGGGCGAAGAAATCATCAGAATTGTAGCCCCAGTCTCAATCTGCATGTTCCTCGTTGTAATCCTCGTCTCCATTCTCAACACCGGTGACTCTTCCTTCTCCGTTTCCAGCATCGCCACCATTGCGTACACCGAGACAACCTCCGATTCCTCCTGGGACAAGTTCCTAGGTGCCCTGCTCAACTCCCTCGCCTTCGTCGTCGTCGTCACCGTGGCCACCTTCGTCCTCGTCCTCCTCTTCTATTTCAGGTGCACTGGCTTCCTCAAAATCTACATGGGTTTCTCCGCTTTCGTCGTTCTAGGGTTCCTCGGCGGGGAAGTTTTCATCTTTTTGATTCAGCATTTTAGTACCCCAATTGATTGTTTCACTTTCTTGTTGCTTCTGTGTAATTTTGCTGTTGTTGGTGTTATGGCTGTCTTTATGTCGAAAATGGCTATTATTGTTACTCAGAGTTACTTGGTTGTTATTGGGATTCTTGTAGCTTATTGGTTCACTATGTTGCCTGAATGGACCACTTGGGCCATGCTTGTTGCCATGGCATTGTATGATCTTGCTGCCGTTTTGTTGCCTATTGGTCCCTTGAGGCTTCTCGTTGAGCTCGCCATATCGCGGGACGAGGAGATTCCAGCTTTGGTTTATGAAGCTAGGCCTGTGAATGTTGAGAATTTGGATCCTAGGGTTGCTGTTGCTCAGAGGAGGCTGTGGAGAGAGAGGAGGGTTACCGAGAATTCTAATCTCCGGGGTGATGCTAATGTGAATGTTAGTAATAATAATGCCTTAGGTCTTGGTGCCAATGCTGAGTTGAACCCTGGTTTGGATTTAAACAGCAATAATCCCAGTTCGGCTGGGGAAGATGCTATTTTGGATTCGAATTTGAGTTCTAGTACTTCTTATGGGATCTATAGTGACAGGAATTTGGTTAGAGCTGAAGAGGGGCGAGTTCAGGAGACCAATTCAGAGGTTACTACCCCATTGATTGGTCATGGAGTGAATGTTCGGATACATAGCAGAGCAGAAAATGTGGATGCATCAGATGAGAATTTGATGTTGGAGGGAATTGGATTGGGTTCATCCGGCGCAATCAAGTTAGGACTGGGCGATTTCATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACTGTGTATGCGTGTTATCTCGCTATCATTGCTGGTCTGGGGATAACACTGATGCTTTTGGCTTTTTATCAGAAGGCTTTGCCTGCTCTTCCCGTGTCAGTCGCACTGGGGGTGCTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTGTTTGTAGTACAATGTTCCATGAATCTTCTGATGTTTTAA 1407 0.462 MDSNAMAQLQRPSTQTPTLLDSLGEEIIRIVAPVSICMFLVVILVSILNTGDSSFSVSSIATIAYTETTSDSSWDKFLGALLNSLAFVVVVTVATFVLVLLFYFRCTGFLKIYMGFSAFVVLGFLGGEVFIFLIQHFSTPIDCFTFLLLLCNFAVVGVMAVFMSKMAIIVTQSYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPIGPLRLLVELAISRDEEIPALVYEARPVNVENLDPRVAVAQRRLWRERRVTENSNLRGDANVNVSNNNALGLGANAELNPGLDLNSNNPSSAGEDAILDSNLSSSTSYGIYSDRNLVRAEEGRVQETNSEVTTPLIGHGVNVRIHSRAENVDASDENLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLAFYQKALPALPVSVALGVLFYFLTRLLLEVFVVQCSMNLLMF* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2018 468 PANTHER PRESENILIN 18 468 - -
Ahy11g2018 468 SMART psh_8 78 454 IPR006639 GO:0004190|GO:0016021
Ahy11g2018 468 PRINTS Presenilin family signature 188 195 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ahy11g2018 468 PRINTS Presenilin family signature 31 41 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ahy11g2018 468 PRINTS Presenilin family signature 205 222 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ahy11g2018 468 Pfam Presenilin 24 458 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ahy11g2018 468 PANTHER PRESENILIN 18 468 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ahy11g2018 468 Gene3D Presenilin 364 460 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2018 Ahy-Chr11 128405987 128421148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2018 1 468 Miscellaneous Gene Families AT2G29900 59.574 4.37e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2018 K04505 - gmx:100799643 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2018 11 128405987 128421148 Ahy11g2018 11 128405987 128421148 ECH
Ahy11g2018 11 128405987 128421148 Ahy1g2898 1 109934270 109936301 hybridization