Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1908 ATGAAACAAGTTGTGTTCTTCCACAACGCTTGGCTCCTTGCAGCGCCAAATCTCCAACGTCTCTCTCTTTCACTTTCTTCTTTTATTGCCATTCATCTTCTTCATCACACCACCAACCCACGGGAGCAACCTCCCCCGAAGTTATGGTTACCTCCTTTTCAGCAAAGTAAACATGACCAACCAACACCCATCATGGAGTTGGTCATTTCCGCCATAAAATCTGCTTCTCACAAGACCCATCTTCTTCAATTACACGCTCATATTCTCCGCACATCTCTTGCTGAACACCCTGCAGTTTCTCTTCACTTCTTGAACCGTGTTGCTCTCTCTGGCCCATTGCAGGACCATAGCTATTCCCACCGTTTCTTCCGGAGCTTTACTTCCCCTTTTGTTTCTCATTACAATACCATGATCAGGGCCTCTTCTATGAGCGATTCACCCCAAAAAGGTCTCTTATTGTATCGAGATATGAGGAGAAGAGGTGTTTCTGCAGATCCATTATCTTCATCTTTTGCTATTAAGTGTTGTATCAGGTTCCTGTGTCTTTTTGGAGGGGCACAGGTTCATTGCAATGTCTTCAAAGATGGACACCAATCAGATAGCCTTTTGCTCACTTCTCTCATGGACTTGTATTCGCAGTGTCAGCAATGTCATGATGCATGCAAGGTGTTTGATGAGATTCCCCAGAGGGATACCATTGCTTGGAACGTCATGATCTCTTGCTTAATTCGTAATAAACGGAGTCGGGATGCTCTGAATTTGTTTGATGTCATGCAGAGCTCAAAGTATGAATGTGAACCTGATGATGTTACTTGTTTGCTTCTTCTTCAAGCTTGTGCTCATTTAAATGCCTTGGAATTCGGTGAACGAATTCATAGATACATCATGGAACATGGTTATGGTGCTGCTCTCAATTTGTCTAATTCTCTGATATCTATGTATTCTCGGTGTGGTAGTTTAGATAAGGCTTATGAGGTATTCAAGGGAACTTGCAATAAAAGTGTGGTTTCATGGAGTGCGATGATTTCTGGTTTGGCAGCTAATGGATATGGGATAGAAGCAATTGAAGCATTTCAAGAGATGCAGAGATTGGGGATTTGGCCTGATGATCAGACATTCACTGGAGTGCTGTCTGCTTGCAGTCATTCTGGATTGGTTGATGAGGGAATCTCATTTTTCGACCGAATGAGTCGAGAGTTTGGGATTACTCCCAACATTCATCATTATGGCTGCATGGTTGATCTCTTCGGTCGCGCTGGTTTACTTGATAAGGCCTATCAACTGATTACCTCAATGGCTGTGAGGCCAGATTCAACAATATGGAGGACCTTGCTTGGAGCTTGCAGAATTTATGGCGATGTTACACTTGGCGAACGAGTTATTGAACACTTGATTGAATTGAAGGCTCAAGAAGCCGGGGATTATGTTTTGCTCCTGAATATTTATTCTTCAGCTGGTCACTGGGATAAGGTAGCAGAAGTGAGAAAACTTATGAAAGAAAAATCAATCCAAACAACACCTGGTTGTAGCACAATTGAGTTGAAAGGAACAGTACATGATTTTGTTGTCGATGATGTTTTGCACCCAAGAAAAAGCGAGATTTATAAGACGCTGAATGAGATCAATAAGCAGCTGAAGATTGCAGGTTATGTTGTTGAGCCTTCATCTGAGTTACATAAGATAGATGAGAAAGAAAAGGGCTATGTGCTCTCTTATCACAGTGAAAAGTTGGCTGTTGCTTTTGGGGTTCTTGCTACTCCACCAGGCACAACACTGAGAGTGGCCAATAATCTCCGACTATGTGTTGATTGCCACAATTTCCTGAAAACATTTTCCTGGGTTTACAACCGTGATGTGGTCCTTAGGGACCATAATCGGTTTCACCACTTCCGTGGAGGGCTCTGCTCTTGTAATGATTATTGGTAA 1926 0.4273 MKQVVFFHNAWLLAAPNLQRLSLSLSSFIAIHLLHHTTNPREQPPPKLWLPPFQQSKHDQPTPIMELVISAIKSASHKTHLLQLHAHILRTSLAEHPAVSLHFLNRVALSGPLQDHSYSHRFFRSFTSPFVSHYNTMIRASSMSDSPQKGLLLYRDMRRRGVSADPLSSSFAIKCCIRFLCLFGGAQVHCNVFKDGHQSDSLLLTSLMDLYSQCQQCHDACKVFDEIPQRDTIAWNVMISCLIRNKRSRDALNLFDVMQSSKYECEPDDVTCLLLLQACAHLNALEFGERIHRYIMEHGYGAALNLSNSLISMYSRCGSLDKAYEVFKGTCNKSVVSWSAMISGLAANGYGIEAIEAFQEMQRLGIWPDDQTFTGVLSACSHSGLVDEGISFFDRMSREFGITPNIHHYGCMVDLFGRAGLLDKAYQLITSMAVRPDSTIWRTLLGACRIYGDVTLGERVIEHLIELKAQEAGDYVLLLNIYSSAGHWDKVAEVRKLMKEKSIQTTPGCSTIELKGTVHDFVVDDVLHPRKSEIYKTLNEINKQLKIAGYVVEPSSELHKIDEKEKGYVLSYHSEKLAVAFGVLATPPGTTLRVANNLRLCVDCHNFLKTFSWVYNRDVVLRDHNRFHHFRGGLCSCNDYW* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1908 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Ahy11g1908 641 PANTHER OS08G0434000 PROTEIN 62 633 - -
Ahy11g1908 641 Pfam PPR repeat family 333 381 IPR002885 -
Ahy11g1908 641 Pfam PPR repeat family 231 280 IPR002885 -
Ahy11g1908 641 Gene3D Tetratricopeptide repeat domain 116 303 IPR011990 GO:0005515
Ahy11g1908 641 Gene3D Tetratricopeptide repeat domain 305 521 IPR011990 GO:0005515
Ahy11g1908 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 404 IPR002885 -
Ahy11g1908 641 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 62 633 - -
Ahy11g1908 641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Ahy11g1908 641 Pfam E motif 451 513 IPR046848 -
Ahy11g1908 641 Pfam PPR repeat 133 162 IPR002885 -
Ahy11g1908 641 Pfam PPR repeat 408 432 IPR002885 -
Ahy11g1908 641 Pfam PPR repeat 308 328 IPR002885 -
Ahy11g1908 641 Pfam PPR repeat 205 229 IPR002885 -
Ahy11g1908 641 Pfam DYW family of nucleic acid deaminases 549 641 IPR032867 GO:0008270
Ahy11g1908 641 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Ahy11g1908 641 TIGRFAM PPR: pentatricopeptide repeat domain 134 165 IPR002885 -
Ahy11g1908 641 TIGRFAM PPR: pentatricopeptide repeat domain 234 264 IPR002885 -
Ahy11g1908 641 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1908 Ahy-Chr11 124322446 124325508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1908 83 641 Glycoside Hydrolase AT3G49170 35.159 1.08e-114 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1908 - - lja:Lj0g3v0169319.1 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1908 11 124322446 124325508 Ahy11g1908 11 124322446 124325508 ECH
Ahy11g1908 11 124322446 124325508 Ahy1g2960 1 111172025 111175137 hybridization