Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1504 ATGTTCATCCCAAAATGTTCCCACTATTCCGAAAATGCCCTTCCATTAGGACTCTGGAGTCTGGAGTCTGGACCGCAATTTCTTTCACGTCTCTGTTCTCCAATTCTTCGTGGTCACCATCTGAAACTATTATATAACCATTTTAACAACCCCAAAATTGTAAAATTCCTGCCTCGTATTAATATTTTCTTGATCCTAACAGAAAGTGGTGATTGTCTAATTTGGCGTTTGGATTTTTTCCCAGCAATGGCAAAAACTTGCAAGTCGCAAGAAGAAATCGCGAACGATGCGATCAAGAACGCTTTGAAGGCTCTGCGGAAGCGGCATTTGCTCGAAGAAGCCGCTCATCGCCCCGCTTTTGAAGCTCTCTCAAGACCCATCGCTTCCCAGGGTTCTGAGTGGAAAGAGAAAGCAGAGAGTCTTCAGTTAGAACTTCAGCAATGCTACAAAGCTCAGTCTCGGTTGTCCGAGCAGCTTGTTGTCGAAGTAGCCGAGTCCAGAGCTTTGAAAGCTTCGGTCCAGGTGAAAGAAACTGCAATTGCCGAAATGCAAAAGGAGTTGACCGAAGTGAGGGAAGAGCGCTCTCAATTAAAGTCAGACTTGGAACAAAAGATTAAGGCTCTTGAATTGGTTATGAGTGAGAATTCGGAACTCAAAGCACAACTAGAGCAGATGACTACCAAAGCCAACAAAGCCGAAGCTGAAAATAAGATGTTGATTGATCGTTGGATGTTAGAAAAGATGAAGGACGCTGAACGCCTCAATGAGGCTAATGCGCTGTATGAAGACATGGTTCAGCGGCTAAAAGCCAGTGGTTTAGAACAACTTGCTAGGCAGCAGGTGGATGGCATAGTTCGTCGAAGTGAAGAAGGTGCTGAATTCTTTTTAGAGTCGAGTATCCCTTCCACATGTAAATACAGGCTCAATGCACATGAAGGTGGTTGTGCTGCCATATTGTTTGAGTATAATTCTAGTAGATTGATCACTGGGGGACAGGATAGGTCTGTTAAAGTGTGGGATACAAATACAGGAACTGTAAGTTCTAATCTTCATGGCTGCCTTGGTTCTGTGTTAGATCTCACTATCACCCATGATAATCGATCTGTCATTGCTGCAAGCAGCTCAAACAACTTGTATGTTTGGGATCTCAATTCAGGCCGAGTCCGTCATACCCTTACTGGCCACACCGAAAAAGTTTGTGCTGTTGATGTTAGCAAGGTTTCAAGTCGTCATGTTGTCAGTGCGGCTTATGATCGTACTATAAAAGTTTGGGACTTGATGAAAGGCTACTGCACTAACACAATCATTTTCCACAGCAACTGCAATGCTCTTTCCTTCAGCATGGATGGGCAGACCATATTTTCTGGACATGTTGATGGTAATCTTCGGCTATGGGACATTCAGACCGGCAAGCTACTTAGTGAGGTTGCTGCACATTCACTTGCTGTCACATCAATATCCCTTTCTAGAAATGGAAATGTTGTATTGACCAGTGGAAGGGATAACTTGCATAATTTGTTTGATGTGCGATCATTGGAAGTTTGTGGCACTCTGAGAGCCTCAGGTAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGCCCAGATGACAATCATGTTGCTGCTGGCTCTGCTGATGGTTCTGTCTATATTTGGTCGATATCTAAAGGCGATATTGTCAGTACTCTGAAGGAACACAGTTCTTCTGTTCTGTGTTGTAGGTGGAGTGGAATGGGGAAACCCCTAGCTTCAGCTGACAAGAATGGAATTGTTTGCGTCTGGACATGA 1791 0.4411 MFIPKCSHYSENALPLGLWSLESGPQFLSRLCSPILRGHHLKLLYNHFNNPKIVKFLPRINIFLILTESGDCLIWRLDFFPAMAKTCKSQEEIANDAIKNALKALRKRHLLEEAAHRPAFEALSRPIASQGSEWKEKAESLQLELQQCYKAQSRLSEQLVVEVAESRALKASVQVKETAIAEMQKELTEVREERSQLKSDLEQKIKALELVMSENSELKAQLEQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVQRLKASGLEQLARQQVDGIVRRSEEGAEFFLESSIPSTCKYRLNAHEGGCAAILFEYNSSRLITGGQDRSVKVWDTNTGTVSSNLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHTEKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEHSSSVLCCRWSGMGKPLASADKNGIVCVWT* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1504 596 Coils Coil 173 242 - -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 434 IPR001680 GO:0005515
Ahy11g1504 596 Coils Coil 88 108 - -
Ahy11g1504 596 Pfam WD domain, G-beta repeat 559 595 IPR001680 GO:0005515
Ahy11g1504 596 Pfam WD domain, G-beta repeat 388 425 IPR001680 GO:0005515
Ahy11g1504 596 Pfam WD domain, G-beta repeat 431 466 IPR001680 GO:0005515
Ahy11g1504 596 Pfam WD domain, G-beta repeat 304 340 IPR001680 GO:0005515
Ahy11g1504 596 Pfam WD domain, G-beta repeat 533 554 IPR001680 GO:0005515
Ahy11g1504 596 ProSitePatterns Trp-Asp (WD) repeats signature. 453 467 IPR019775 -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Ahy11g1504 596 PANTHER AUTOPHAGY PROTEIN 16-LIKE 90 596 IPR045160 GO:0000045
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 596 - -
Ahy11g1504 596 CDD WD40 304 595 - -
Ahy11g1504 596 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 90 596 - -
Ahy11g1504 596 ProSitePatterns Trp-Asp (WD) repeats signature. 412 426 IPR019775 -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 475 IPR001680 GO:0005515
Ahy11g1504 596 Pfam Autophagy protein 16 (ATG16) 128 255 IPR013923 -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 426 - -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 563 IPR001680 GO:0005515
Ahy11g1504 596 Gene3D - 173 244 - -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 476 511 IPR001680 GO:0005515
Ahy11g1504 596 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Ahy11g1504 596 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Ahy11g1504 596 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Ahy11g1504 596 Coils Coil 251 271 - -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 344 - -
Ahy11g1504 596 SUPERFAMILY WD40 repeat-like 300 595 IPR036322 GO:0005515
Ahy11g1504 596 SMART WD40_4 301 340 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 428 466 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 511 554 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 557 596 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 343 382 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 469 508 IPR001680 GO:0005515
Ahy11g1504 596 SMART WD40_4 385 425 IPR001680 GO:0005515
Ahy11g1504 596 Gene3D - 440 596 IPR015943 GO:0005515
Ahy11g1504 596 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Ahy11g1504 596 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 596 IPR001680 GO:0005515
Ahy11g1504 596 Gene3D - 296 439 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1504 Ahy-Chr11 64917467 64920436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1504 392 595 Miscellaneous Gene Families AT5G08390 20.000 1.25e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1504 K17890 - gmx:100806054 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1504 11 64917467 64920436 Ahy11g1504 11 64917467 64920436 ECH