Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1235 ATGGGCTGCTTCAACTCTAAGCCAACAAGACAGTCTCCGGGGCAGGTCGATCCAGTAGTTCTTGCATCACAGACAGCTTTCACGGTCAGTGAGGTTGAAGCACTTTTTGAGCTATTTAAGAGCATAAGCAGTTCGGTCGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAGGAAGAAGGAGAATATCTTTGCCAATCGGATCTTTGATCTATTTGATGTTAAGAGGAAGGGAGTAATTGACTTTGATGACTTTGTTCGATCTCTCAATGTCTTCCACCCAAATGCACCACTGGAAGACAAGATTGATTTTTCATTTAGGCTCTATGATTTGGACAGCACAGGCTTTATAGAACGCCAAGAGGTCAAGCAAATGTTGATTGCGCTTCTCTGTGAATCTGAAATGAAGCTAGCAGATGAGGTGATCGAAACAATTATTGACAAGACATTCATGGATGCTGACCTGAACAAAGATGAGAAGATAGACATTGTTGAGTGGCAAAATTTCGTTTCTAAAAATCCATCATTGCTCAAAATCATGACGCTACCCTATCTGAGGGATATAACCACTTCTTTCCCAAGTTTTGTATTTAACTCTAACGTGGATGAAATCGCTGCTTGA 642 0.405 MGCFNSKPTRQSPGQVDPVVLASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNRKKENIFANRIFDLFDVKRKGVIDFDDFVRSLNVFHPNAPLEDKIDFSFRLYDLDSTGFIERQEVKQMLIALLCESEMKLADEVIETIIDKTFMDADLNKDEKIDIVEWQNFVSKNPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIAA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1235 213 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Ahy11g1235 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Ahy11g1235 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Ahy11g1235 213 Pfam EF hand 153 177 IPR002048 GO:0005509
Ahy11g1235 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Ahy11g1235 213 Gene3D - 17 211 - -
Ahy11g1235 213 PANTHER CALCINEURIN B 1 212 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ahy11g1235 213 CDD EFh 108 178 IPR002048 GO:0005509
Ahy11g1235 213 SMART efh_1 108 136 IPR002048 GO:0005509
Ahy11g1235 213 SMART efh_1 71 99 IPR002048 GO:0005509
Ahy11g1235 213 SMART efh_1 152 180 IPR002048 GO:0005509
Ahy11g1235 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Ahy11g1235 213 PRINTS Recoverin family signature 75 96 - -
Ahy11g1235 213 PRINTS Recoverin family signature 122 140 - -
Ahy11g1235 213 PRINTS Recoverin family signature 168 188 - -
Ahy11g1235 213 PANTHER BNAC07G34450D PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1235 Ahy-Chr11 40078196 40082896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1235 1 213 EF-hand Containing Proteins AT4G17615 81.690 2.81e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1235 K06268 - cit:102622664 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1235 11 40078196 40082896 Ahy11g1235 11 40078196 40082896 ECH
Ahy5g0445 5 5232643 5235218 Ahy11g1235 11 40078196 40082896 PCT
Ahy11g1235 11 40078196 40082896 Ahy5g0445 5 5232643 5235218 PCT