Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1194 ATGGCGGGATTGTCAGTGTCCGCTCTTGCGAAATACAAGCTTGTGTTCTTAGGTGATCAGTCCGTCGGAAAAACCAGCATCATTACCCGATTCATGTACGACAAATTCGACAACACCTACCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACCATTCGGCTGCAGTTGTGGGATACTGCTGGACAAGAACGATTCAGAAGTCTTATTCCAAGCTACATTAGAGATTCATCTGTTGCCGTCATCGTCTATGATGTTGCAAGCCGTCAGACGTTCCTAAACACAGTAAGGTGGATCGAGGAGGTGCGCAGTGAAAGAGGCAACGATGTTATTCTTGTTCTTGTTGGCAACAAAACTGACCTTTTGGACAAGAGGCTCTCTTTCGTAAAATTGCTGCTGCGTTACCCGGAATGGAAACATTATCTTCCTCGAAACAAGATGATATGGTCGATGTCAACCTTAAAACTTCTGGTGGCAATGATTCTCAAGCTGAGGGTGGTTGTTGTTGATCCTGCCTTGTCTTCCAGTTTTTATTTATTTATTTATATTTATTTATTATATTTGTGTATCTGTCTGCTCCATGCTGCCTTGTTTTTGGATGTGTTTGCTTCATATTTGTAG 642 0.4143 MAGLSVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTVRWIEEVRSERGNDVILVLVGNKTDLLDKRLSFVKLLLRYPEWKHYLPRNKMIWSMSTLKLLVAMILKLRVVVVDPALSSSFYLFIYIYLLYLCICLLHAALFLDVFASYL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1194 213 PRINTS Transforming protein P21 ras signature 35 51 - -
Ahy11g1194 213 PRINTS Transforming protein P21 ras signature 12 33 - -
Ahy11g1194 213 PRINTS Transforming protein P21 ras signature 115 128 - -
Ahy11g1194 213 PRINTS Transforming protein P21 ras signature 53 75 - -
Ahy11g1194 213 PANTHER DRAB5-RELATED 5 133 - -
Ahy11g1194 213 SMART ran_sub_2 17 204 - -
Ahy11g1194 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 141 IPR027417 -
Ahy11g1194 213 SMART rab_sub_5 12 141 - -
Ahy11g1194 213 PANTHER GTP-BINDING PROTEIN RAB6 5 133 - -
Ahy11g1194 213 SMART ras_sub_4 9 156 - -
Ahy11g1194 213 CDD Rab6 12 132 - -
Ahy11g1194 213 Gene3D - 6 148 IPR027417 -
Ahy11g1194 213 Pfam Ras family 13 132 IPR001806 GO:0003924|GO:0005525
Ahy11g1194 213 SMART rho_sub_3 14 142 IPR001806 GO:0003924|GO:0005525
Ahy11g1194 213 ProSiteProfiles small GTPase Rab1 family profile. 5 213 - -
Ahy11g1194 213 ProSiteProfiles small GTPase Ras family profile. 7 200 IPR001806 GO:0003924|GO:0005525
Ahy11g1194 213 TIGRFAM small_GTP: small GTP-binding protein domain 11 132 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1194 Ahy-Chr11 37126658 37131076 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1194 K07893 - dcr:108193563 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1194 11 37126658 37131076 Ahy11g1194 11 37126658 37131076 ECH
Ahy11g1194 11 37126658 37131076 Ahy1g1187 1 31159738 31164188 hybridization
Ahy5g0461 5 5559022 5562080 Ahy11g1194 11 37126658 37131076 PCT
Ahy11g1194 11 37126658 37131076 Ahy5g0461 5 5559022 5562080 PCT