Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy11g0594 | ATGCTACAAGGAATGGATATATCAGAGTACACTCGAATTGTTTTCGACAAACTTCAAAAATTGGAACCAGAGCATGCCACAAAGATAATTGGATACCTCCTTGTTCAAGAACATGGCGAGGAACAGATGATTAAATTGGCTTCATACCCAGACCACCTGATCCGTGAAGTCGCTTTCAAAGCCAAAACCGAATTCCAGATACTAACCACACTTCCAGATCTAAGGCACTTAATCACCCTCCAACTTTCCTCTCCTTCTTGGGATCATCACTCTTTCTCGGAACTTCAGAAGCAGTTCGAAATATTCGAAACAAGAATGGCAAATGATTACTGCATTGCAGATGCCTTGCCTTGCAAGTTAAGAGGCGGAAGGAGGTTTTCGAACGAGTTTCCGGTGAAAACCTGTCACTATTTCAACAAAGGCTATTGCAAGCATGGAGCTAGTTGTCGCTATTATCACGGACAGGCTGGCAACGAGATGTACGGAAGCTACGACTATTCTTCTTCTTCTTCTTCGGTTCAGGGGGATCAAGTGATTTCGGCAGGGTCTTTGGCGAATTTGGAGACGGAAATCGTGGAGCTGTTGAAATCAAGAAAAGGAAGTCCGATTTCGATAGCTTCGCTTCCAATGGCGTACTATGAGAAGTATAACAAGGTACTGCAGGCTGAAGGTTATCTTACTGAGAGCCAGAGACATGGTAAGTCTGGTTATAGTTTGACCAAGCTTCTTGCAAGATGGAAGAATTGCATTCGCGTATTTGACAGGCCTCATGGGCAGCACGCAGTGGTTTTGGCAGAAGATGCTCCAAAATACATAGGAAAGGGAGAGTTTGGTCAAAATATTAGTGCGTCAAGACAAATATATTTGACATTTCCAGCTGATAGCACTTTCACAGAGGAAGATGTTTCAAACTACTTCAACACCTTTGGGAGTGTTGAAGATGTAAGGATTCCATGCCAACAGAGAAGGATGTTTGGATTTGTGACCTTTGTTGAACCAGAAACTGTTAAAATGATTTTGGAAAAGGGAAATCCCCATTATGTTCGTGGCTCTAGGGTGCTTGTAAAACCTTACAAGGAGAAGCCAAAAGTTGATAGGAAGTACGTAGAGAGGATTGAGCACCCTGATTGTTATTCGTCTCGCTATGTAGGTCTGGATGCAGAGCTTACAATTCCAAGAAGATGCGGTAACCCTCAAGGCCTGAGGAGATTCCTCATTGAAGAGCAGGAGCATGCTCTTGAATTCCAAAGAAGACGAATTGCAGAGTTACAGCTAGGCCGAAAATGGATGTCGAATTCACCCCATTTTGGCTTTGACATGGAGGAGCTAAAGGTTCCTGATGATCATTTCAATCATCAGTCCACTGGATCCTCCAGTAGTTATGCTTCAACTGACAAATCTGGATATACAAAAACAGAAGCTAACTATACTGATCAGGACAGCTGTGAAGGATTGAATCTCCCAGAAAGTCCATTTGCATTTCCGGTAGATAATGAAATTTCAGCCATGGTATAA | 1515 | 0.429 | MLQGMDISEYTRIVFDKLQKLEPEHATKIIGYLLVQEHGEEQMIKLASYPDHLIREVAFKAKTEFQILTTLPDLRHLITLQLSSPSWDHHSFSELQKQFEIFETRMANDYCIADALPCKLRGGRRFSNEFPVKTCHYFNKGYCKHGASCRYYHGQAGNEMYGSYDYSSSSSSVQGDQVISAGSLANLETEIVELLKSRKGSPISIASLPMAYYEKYNKVLQAEGYLTESQRHGKSGYSLTKLLARWKNCIRVFDRPHGQHAVVLAEDAPKYIGKGEFGQNISASRQIYLTFPADSTFTEEDVSNYFNTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILEKGNPHYVRGSRVLVKPYKEKPKVDRKYVERIEHPDCYSSRYVGLDAELTIPRRCGNPQGLRRFLIEEQEHALEFQRRRIAELQLGRKWMSNSPHFGFDMEELKVPDDHFNHQSTGSSSSYASTDKSGYTKTEANYTDQDSCEGLNLPESPFAFPVDNEISAMV* | 505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy11g0594 | 504 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 100 | 503 | - | - | |
| Ahy11g0594 | 504 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) | 5 | 102 | - | - | |
| Ahy11g0594 | 504 | Pfam | OST-HTH/LOTUS domain | 183 | 261 | IPR025605 | - | |
| Ahy11g0594 | 504 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 296 | 352 | IPR000504 | GO:0003723 | |
| Ahy11g0594 | 504 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 285 | 360 | IPR000504 | GO:0003723 | |
| Ahy11g0594 | 504 | Gene3D | - | 287 | 365 | IPR012677 | - | |
| Ahy11g0594 | 504 | Coils | Coil | 406 | 426 | - | - | |
| Ahy11g0594 | 504 | SUPERFAMILY | CCCH zinc finger | 131 | 154 | IPR036855 | GO:0046872 | |
| Ahy11g0594 | 504 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 133 | 155 | IPR000571 | GO:0046872 | |
| Ahy11g0594 | 504 | SMART | rrm1_1 | 286 | 356 | IPR000504 | GO:0003723 | |
| Ahy11g0594 | 504 | MobiDBLite | consensus disorder prediction | 447 | 472 | - | - | |
| Ahy11g0594 | 504 | MobiDBLite | consensus disorder prediction | 450 | 472 | - | - | |
| Ahy11g0594 | 504 | ProSiteProfiles | OST-type HTH domain profile. | 183 | 267 | IPR025605 | - | |
| Ahy11g0594 | 504 | CDD | RRM_AtC3H46_like | 287 | 356 | IPR034365 | - | |
| Ahy11g0594 | 504 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 156 | IPR000571 | GO:0046872 | |
| Ahy11g0594 | 504 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 100 | 503 | - | - | |
| Ahy11g0594 | 504 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 5 | 102 | - | - | |
| Ahy11g0594 | 504 | SUPERFAMILY | RNA-binding domain, RBD | 295 | 366 | IPR035979 | GO:0003676 | |
| Ahy11g0594 | 504 | Gene3D | - | 126 | 179 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy11g0594 | Ahy-Chr11 | 9312739 | 9316970 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy11g0594 | - | - | aip:107645763 | 991.875 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Ahy11g0594 | 11 | 9312739 | 9316970 | Ahy11g0594 | 11 | 9312739 | 9316970 | ECH |