Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1733 ATGGCTGAGGCAGTAAGAAAAGCCACAACTCACCCATCTTCAAACGTTTCTTCAGTCGTAGCTTCCATTACGTCACTGATTCAAACCATAAACCCCCAAAACCCAAATGCCTGTGAAGCACTGAAACCATTCTCACCTTACCTCACTCAACCATTGGTCATCCAAGTCATCAAGAACTTACGCAGTCCCAACCACGCACTATTCTTCTTCAACTGGGCCTCCAACTCCCAACCCAACCCCAACAACTACTCTCACACGCGCCACTGTTACGCCGCCATAACCGACTCCCTTCTCTCTCACTCTCTCTTCTCCACCGCCCACCACCTCCTCCACCGCTCCAAGAACCTCTCCGACTCCTTGATTTGCAAATTCATCGTTGCTCTCGGCAATCGCGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAGAGCTTTTCACATGGCCGATGCTTGTTATCCTGTAACGCCGTCTTGGGTGTTCTTGTAAGAGCCAATCGGATCAATTTGTCAAAGTCTATCTTTGACCAGGTTGTGGAGGAGGGTGTGTTTGAGCTCGACGTGTTCACTTATACCACCATGATTAGGGGCTTCTGCAAAATAGGCATGGTCCACAGTGCACTCAAGGTGTTCGATGAAATGCGCTGTTCGCCCAATTCGGTTACTTACAACACTTTGATTCACGGGTTTTGCAAGAACGGTGATATGGAGGGTGCCAAGAGGGTTTTTGATAGAATGGTGGAAGTAGGGGGTCAGAGTTGCAAGCCGGATGTGGTGACTTATACTACTTTAATTGATGGATATTCAAAGAAAGGTGAGTTCCGCGAAGCTTTAGAGTGTATGGAAGAGATGGTAAAACAGGGTTGTCATCCAAATGTGTTGACCTACAATGCGTTGATTGAAGGCCTTTGCTTGGGTGGGAATGTGGACGAGGCCATGAAGATGATGACTAGGATGCGATTGAATGGTTTAGAAGGCAATGTTACCACAAACACCAGCATCATGAAGGGTTTTTGCATTGTGGGAAGGTCTGAAGAAGCTATCATGCATCTGAAGGAAATGGATAGTCGCGGGATGAGGCCGGATTTGAAGGCTTACAGTGTCATAGTCAATGAGTATTGCAAAATTAGGAAACCAGATGATGCCCTTTTACTTATAAGGGAGATGGTGGTCAAGGGAATCAAGCCATCTGTGTCAAGTTTTAATGCAGTGTTTAGAGTTCTTGTGGATATAGGGAAGCTGGATGAAGCAGTTCATCTTTTGAAGCAGATGCCTCAAATGGGCTGCATACCCAACTTCTTATCATATAGCATAGTGATCTGTGGTCTTTGTAAAGTGAATGGTAGGATGCAAGAAGTTGAAGGGCTTGTATCTGAGATGCTTGAGAACGGACATGACCTTGATACCACCTTGTACAATTGCTTGCTTGAGGGATATTGTGATCTTGGGGATGAGGAAATGGCATTGAGGACTGTCTATCACATGATTGATAAGAACTTTGTAATCAACAAAGACACATTCTGCATTTTTGTCAAGGAGTTGCGTGGAAAGGGAAAACTTAGCAAGGCAGTGACTGTTGTTGAAGAGATGTGCAGGAGATGCAATGTACCTGATATAAATTCTTACAGAGCGTTACTATCTCAGTCGTTGGAAAGTGATCAAAGATCCTTCAATCAAATATTACTCTAG 1692 0.4521 MAEAVRKATTHPSSNVSSVVASITSLIQTINPQNPNACEALKPFSPYLTQPLVIQVIKNLRSPNHALFFFNWASNSQPNPNNYSHTRHCYAAITDSLLSHSLFSTAHHLLHRSKNLSDSLICKFIVALGNRGDIRGAIHWFHKAKSFSHGRCLLSCNAVLGVLVRANRINLSKSIFDQVVEEGVFELDVFTYTTMIRGFCKIGMVHSALKVFDEMRCSPNSVTYNTLIHGFCKNGDMEGAKRVFDRMVEVGGQSCKPDVVTYTTLIDGYSKKGEFREALECMEEMVKQGCHPNVLTYNALIEGLCLGGNVDEAMKMMTRMRLNGLEGNVTTNTSIMKGFCIVGRSEEAIMHLKEMDSRGMRPDLKAYSVIVNEYCKIRKPDDALLLIREMVVKGIKPSVSSFNAVFRVLVDIGKLDEAVHLLKQMPQMGCIPNFLSYSIVICGLCKVNGRMQEVEGLVSEMLENGHDLDTTLYNCLLEGYCDLGDEEMALRTVYHMIDKNFVINKDTFCIFVKELRGKGKLSKAVTVVEEMCRRCNVPDINSYRALLSQSLESDQRSFNQILL* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 468 IPR002885 -
Ahy10g1733 563 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 545 - -
Ahy10g1733 563 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 3 545 - -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 296 328 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 190 218 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 260 294 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 333 363 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 222 251 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Ahy10g1733 563 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Ahy10g1733 563 Gene3D Tetratricopeptide repeat domain 111 220 IPR011990 GO:0005515
Ahy10g1733 563 Gene3D Tetratricopeptide repeat domain 221 320 IPR011990 GO:0005515
Ahy10g1733 563 Gene3D Tetratricopeptide repeat domain 391 560 IPR011990 GO:0005515
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat 472 501 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat family 397 446 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat family 257 305 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat family 328 376 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat 217 248 IPR002885 -
Ahy10g1733 563 Pfam PPR repeat 186 216 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Ahy10g1733 563 Gene3D Tetratricopeptide repeat domain 321 390 IPR011990 GO:0005515
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Ahy10g1733 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Ahy10g1733 563 SUPERFAMILY HCP-like 130 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1733 Ahy-Chr10 98326854 98328545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1733 42 562 Glycosyltransferase AT1G05670 23.706 3.25e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1733 - - aprc:113866240 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g2182 20 120814053 120815696 Ahy10g1733 10 98326854 98328545 hybridization