Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g1549 ATGTATGTTTCACATTGGTATTTAAGGGGATTTCAATATAAGGAGGATATGCTGCTCTCTCATGATGGTGGAGAAGATGAAGTGTTCTTTGATTCTCTGGATTGTTTGTCACCACCTCACGATGATGATGATGATGAGTTTGGTTATGAGGTTTGGATGAATGAGCCTCTTTGTGTGGAGGAAAGGAGGGAAAGGTTTCTTCAGAGAATGGGTATGGTTAGTGTTAGTGTCTCTTCTTCACACAATATGAATGATTTTGATGATGTCACATCTTCAACTGCTTCCATTTCTTGTGTTCCTACTTCTCAAGACGTAGCATTGTTTGATGAAATTAAGAAACGACCGGAGAATTCACCGGTTACTTTGCCCAAACAAGACTTTGGAGAATTTGGAACTTGTACAAGTAAAAAGAAGAAGAATTGGTGGAATCGCATTGCATATGGAATGAAAATTGGATCAAGATTGGATAAGGGAAGTACTAAAATTACAAGAAGGATCAATGTGAATCAGATTAAAAAGAGGTGGATGGAATTGAGTGCATTGTTTACTGGGCAGAATATTAGAGCTCACGATGGCCTAATTTGGACCATGAAATTTAGTCCCAGTGGCCGCTATCTTGCTAGTGGAGGCCAAGACGGCGTTGTTCGCATTTGGCGTGTCGTATCCACCGAGGCATCCAGTCTTTGCTTCAATGGAGTTAAGAGTGCTGACAGCAAAGTGAAACCACACAACTCTGCTCCTAAAACTCAATCCTTTGTTGTGTTCCCAAACAAGATTTTCCAAATTGAGGAATCACCAATGCAAGAATTTTGTGGTCATTCCAGTGATGTCTTGGATCTGGCTTGGTCAAGTTCAGATATTCTGCTTTCATCTTCAATGGATAAAACTGTTCGCATGTGGCAGATTGGTTGTAATCAATGTCTACATGTTTTCCATCACACAGATTATGTGACATGCATTCAATTCAATCCTGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTTCGAATATGGGGAATGCGCGAAGAGCGAGTGGTTGACTGGGCAGACATTCGAGATGTCATAACTGCCATAAGTTACCAACCAAATGGAAAGGGATTTGTTGTTGGTTCCCTTACGGGCATATGTCGCTTTTATGTTGCTTCGGGCAAACATTTCCATCTTGAGGCACAGATTAATGTTAGCGGAAAGAAGAGAACATCAACATCTCGCAACAAGATCACTGGAATTCAGTTTTCCAAGAAAAACCACCAAAGAGTCATGATCACATCAGAAGATTCCAAAGTCCGAATATTAGAAGGCATGGAACTTGTTCAGACATTTAAAGGCCGTCGAAAATCTGGAAGTCAGACATCAGGTGCATTTATGTCGAGCGAGAAACATATAATTTCAGTTGGAGATGACTCTCGTGTATATATTTGGAACTACAAAGACTTTGGAAATGCTTCATCCAAGCATGCAAAATCGAACAATTCCTGTGAGTACTTTTGCTCCAAGGGTGTTACTGTTGCGATACCTTGGTCAGGAATGAGCACAGAAAGTAGCAACTCCTACAACAATTTTGCACATTGTTTCCCAGAAACTCAACACCAGCTAGAAGCTGCTCCCATGGTAGTTGGTTCTTCGGAACGTTTTTCCTTAGGTAGTTGGTTCTCCATTGACGGCACGTGCCGTGGTTCCATGACATGGCCAGAGGAGAAGCTCCCTAGTTGGGATTTACCTCTTGCGGAGCACGATGAATTCCATCACAGCCGGCCACAGCTACGCCCCAAAGAACCTTGTAATGACGGCTGTGTGTCAGAAACATGGGGACTATCGATAGTTGCAGCCGGTTGTGATGGGACCATCAAGACATTCCACAACTTTGGATTGCCTGTTAGGCTCTAG 1899 0.4223 MYVSHWYLRGFQYKEDMLLSHDGGEDEVFFDSLDCLSPPHDDDDDEFGYEVWMNEPLCVEERRERFLQRMGMVSVSVSSSHNMNDFDDVTSSTASISCVPTSQDVALFDEIKKRPENSPVTLPKQDFGEFGTCTSKKKKNWWNRIAYGMKIGSRLDKGSTKITRRINVNQIKKRWMELSALFTGQNIRAHDGLIWTMKFSPSGRYLASGGQDGVVRIWRVVSTEASSLCFNGVKSADSKVKPHNSAPKTQSFVVFPNKIFQIEESPMQEFCGHSSDVLDLAWSSSDILLSSSMDKTVRMWQIGCNQCLHVFHHTDYVTCIQFNPVDENYFISGSIDGKVRIWGMREERVVDWADIRDVITAISYQPNGKGFVVGSLTGICRFYVASGKHFHLEAQINVSGKKRTSTSRNKITGIQFSKKNHQRVMITSEDSKVRILEGMELVQTFKGRRKSGSQTSGAFMSSEKHIISVGDDSRVYIWNYKDFGNASSKHAKSNNSCEYFCSKGVTVAIPWSGMSTESSNSYNNFAHCFPETQHQLEAAPMVVGSSERFSLGSWFSIDGTCRGSMTWPEEKLPSWDLPLAEHDEFHHSRPQLRPKEPCNDGCVSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Ahy10g1549 632 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Ahy10g1549 632 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Ahy10g1549 632 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Ahy10g1549 632 SMART WD40_4 304 343 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 398 437 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 180 219 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 345 384 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 263 301 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 578 624 IPR001680 GO:0005515
Ahy10g1549 632 SMART WD40_4 438 479 IPR001680 GO:0005515
Ahy10g1549 632 Gene3D - 179 514 IPR015943 GO:0005515
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 310 IPR001680 GO:0005515
Ahy10g1549 632 Pfam WD domain, G-beta repeat 187 218 IPR001680 GO:0005515
Ahy10g1549 632 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Ahy10g1549 632 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Ahy10g1549 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Ahy10g1549 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 124 632 - -
Ahy10g1549 632 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 21 99 - -
Ahy10g1549 632 SUPERFAMILY WD40 repeat-like 185 622 IPR036322 GO:0005515
Ahy10g1549 632 PANTHER WD REPEAT DOMAIN 44 124 632 IPR040324 -
Ahy10g1549 632 PANTHER WD REPEAT DOMAIN 44 21 99 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g1549 Ahy-Chr10 90322429 90328455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g1549 176 383 Miscellaneous Gene Families AT5G08390 21.127 2.61e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g1549 K20241 - gmx:100801576 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g1985 20 112396716 112403073 Ahy10g1549 10 90322429 90328455 hybridization