Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2232 ATGAATTCCATAACCCTTTTAGGTCCAAGGATAGTCCACAAAATTTCCCATTGCTTGATTATCTCGCGGAAATTATGTGACCATACGGTTCATGGTTATGATGGGTTTGAATGCATTGAGGAACCTTTGAAAAAGATAGTTTCAGATGATGATTCCAATGTGGATGAAAGGCTCCATATGGACGAGGATTGGAGCAAATTGAAAGGCTCCAATGTGAATGAGGATTCTAACCAGAAGCAGTTTTCACTTAGAAGAGGGTTCTTAGAAACTGTGAAGTTAGATGCCAAGAAGGTCCTTGAGGTTCTTCGTCAAGACGGTCCTGGCCTTGATGCTAGGTCGGTTTTAGGTGAATTGGATATAAGGCCATCAGGGCTACTTGTGAGAGAGGTTTTCATAGGAATCTTGAAGAGCATAAATTTTGAGAATAAGACTAGGTGTGCCAAGTTGGCATACAAGTTTTTTGTTTGGTGTAATCAGCAGGAAGCTTACAGGCCGACTGCAAATGCTTATCACTTGGTTATGAACATATACGCCGAGTGTGAAGAGTTCAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGAAAAAGGGTTTCCTGCTACTGCTCGTACCTTCAACATTTTGATTCGAACTTGTGGTGAGGCAGGCTTAGCTAAGAAATTAGTGGAGAGGTTGATAAAATCCAAGACATTTAACTATAGGCCTTTTAAGCACTCCTACAATGCGATTTTGCATGGTCTTCTTGTTTTGAACCAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGTTGCTAGAGGGTTTTTCGTCTGATGTTTTAACTTATAATATTATCATTTATGCCAAGTACAGACTTGGAAAGTTAGATCAGTTCCACATACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCAGATTTTCATACCTACAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAAACCGCTTGCTGCTCTCAATCTTTTAAATCTCATGAGAGAATCAGGAATAGAGCCAACTGTACTTCATTTCACAACATTGATAGATGGACTAAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGGTGCATGCCTGACGTGGTGGCTTACACTGTAATGATCACTGGTTATGTAGTGGCTGATGAGCTTGAGAAGGCACAGGAAATGTTTCATGAGATGATTTCTAGAGAACTAGTTCCAAATGTATTTACATACAATTCCATAATTCGGGGATTATGCAAGGCTAGAAAGTTTGATGAAGCATGCTCAATGCTTAAGGAAATGGAGACCAGAGGTTGTAGTCCAAATTTTGTTGTCTATAATACGTTAGTGAGTAGTTTGCGCAATGCTGGGCGGACGGCTGATGCTCATGAAGTGATAAGGCAGATGATGGAGAAGGGGAAATATGCCCACTTACTTTCTAGGTTCAAAGAGTATAATAGATAA 1476 0.3991 MNSITLLGPRIVHKISHCLIISRKLCDHTVHGYDGFECIEEPLKKIVSDDDSNVDERLHMDEDWSKLKGSNVNEDSNQKQFSLRRGFLETVKLDAKKVLEVLRQDGPGLDARSVLGELDIRPSGLLVREVFIGILKSINFENKTRCAKLAYKFFVWCNQQEAYRPTANAYHLVMNIYAECEEFKALWRLVDEMIEKGFPATARTFNILIRTCGEAGLAKKLVERLIKSKTFNYRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLEGFSSDVLTYNIIIYAKYRLGKLDQFHILLDEMGRNGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRESGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVADELEKAQEMFHEMISRELVPNVFTYNSIIRGLCKARKFDEACSMLKEMETRGCSPNFVVYNTLVSSLRNAGRTADAHEVIRQMMEKGKYAHLLSRFKEYNR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2232 491 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Aev09g2232 491 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Aev09g2232 491 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Aev09g2232 491 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Aev09g2232 491 TIGRFAM PPR: pentatricopeptide repeat domain 448 477 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Aev09g2232 491 Pfam PPR repeat family 271 317 IPR002885 -
Aev09g2232 491 Pfam PPR repeat family 375 424 IPR002885 -
Aev09g2232 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 491 - -
Aev09g2232 491 Pfam PPR repeat 337 368 IPR002885 -
Aev09g2232 491 Pfam PPR repeat 441 473 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Aev09g2232 491 Pfam PPR repeat 239 268 IPR002885 -
Aev09g2232 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Aev09g2232 491 Gene3D Tetratricopeptide repeat domain 126 248 IPR011990 GO:0005515
Aev09g2232 491 Gene3D Tetratricopeptide repeat domain 251 405 IPR011990 GO:0005515
Aev09g2232 491 Gene3D Tetratricopeptide repeat domain 406 478 IPR011990 GO:0005515
Aev09g2232 491 PANTHER OS10G0506000 PROTEIN 1 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2232 Aev-Chr9 24990290 24991765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g2232 239 477 Glycosyltransferase AT1G05670 32.636 1.58e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g2232 - - ccaj:109794849 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2232 09 24990290 24991765 Aev09g2232 09 24990290 24991765 ECH