LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev09g1354	ATGGGTGACAAAGAGGTGAAAGAAGAAGCCAAGTCCATCCCCCAATGGAAGAAGCAATATGGTGGATTCAGAGCAGCTATGTTTGTTTTTGTATTGACAGCACTGGACAACATGGGTTTTGTGGCAAACATGGTGAGCTTAGTTCTCTACTTTTATGGGGTTATGCACTTTGATCTGTCAAGTTCTGCCAACACACTGACAAACTTTTTGGGCTCAACTTTCTTGCTCTCACTCGTTGGAGCTTTCATCTCTGATACTTACTTGAACAGACTAACCACATGCTTGCTTTTTGGATCACTCGAAGTCCTGGCTTTGGTTCTGCTCACGGTTCAAGCTGCTTTAGAAAATTTACACCCAGATGCATGTGGAAAATCAAGCTGTGTCAAAGGTGGGGTTGCGGTGATGCTGTACAGTTCACTCTGTTTTCTGGCATTGGGTTGTGGAGGGGTAAGAGGGTCTATGACAGCACTTGGCGCAGACCAATTTGATGAGAAGGACCCAATTGAAGCGAAAGCTCTTGCACGCTATTTCAATTGGCTCTTGCTAAGCACAACACTTGGGTCAGTTATTGGTGTCACTGGTGTTGTTTGGATCAGCACCCAGAGAGCTTGGAAATGGGGGTTCCTCGTAGTTACCTTGGCTTCCTCTGTTGGGTTTGTTACCCTTGCGCTTGGCAAGCCATTTTACCGCATCAGGAGTCCCGGTGAAAGCCCCATTTCAAGGATAACTCAGGTTATTGTTGTGGCTTTTAAAAACCGAAAGCTAACACTGCCCGTCTCTCATGAGGAACTTTATGAGATCAGTGATAAAGATGCTAAAGGAGTAGAGAGGATCGCACACTCAAACCAGATGAGGTTTCTAGATAAAGCAGCAATTGTTCGAGGAAACTTTGAACCAAAAGCATGGAAGGTGTGCACAGTGACACAAGTGGAAGAGGTGAAGATCCTAACAAGAATGCTACCAATATTAGGCAGCACCATAATAATGAACACTTGTCTAGCACAGCTTCAAACCTTCTCAGTCCAACAAGGAAATGCAATGAACCTGAAACTTGGTTCTTTCACAGTCCCAGCAGCATCAATTCCTGTTATACCCCTTCTTTTCCTTTGCATCCTTATCCCAATCTATGAGTTCTTCTTTGTCCCATTTGCAAGAAAAATCACACACCACCCTTCAGGTGTTACACAGCTTCAGAGAGTTGGTGTTGGTTTGGTTCTCTCCTCAATTTCCATGGCAGTAGCTGGAATCATAGAAGTGAAAAGAAGGGACCAAGCAAAAAAAGACCCTTCAAAACCAATTAGCCTATTTTGGCTCTCATTCCAATATGCTATATTTGGGATTGCAGATATGTTCACACAAGTTGGACTACTTGAATTCTTTTACAGGGAAGCACCTTTAACAATGAAATCACTTTCAACTTCATTCACATGGTTATCCATGTCCTTTGGTTACTTCTTGAGCACAGTATTTGTCAGTGTCATAAACAATATTACCAAAAGGATCACTCCAAGCAAACAAGGATGGTTACATGGTTTTGATCTAAACCAGAACAATCTGAACCTGTTTTATTGGTTCTTAGCAATATTAAGTTGTCTTAATTTTTTCAACTTCCTTTATTGGGCCAATTGGTACAAGTACAAATCAGAAGACAAGAATTCAGAGGCTAATTTGGAGGGTGTGGGAGAAATAACAACACCTTCTCTCAAGAAGGTTGGGGGTGAAGCAAAAAACCATGAAATGAATATGATGATGGCTATGGCTAAGGCTAAGGAAAGTAGCCAAACTAGTGAAGCCAATAGTGAGGGACCCTCTTCCTCTGATGAAACAGAGGATGGGAAGGAAAAACAAAAGGGAAAAGGGAGAGAATTAATGCCTTTGTTGAACACAATGAGTGCAGTTCACATTTGTCTGAACCATTCAATTTCTCAACAATCTTACAGCATTAGGAAACTTTTTAATACTGAGAGGGAAAGCACTTTGGGAAAGGTACAACAAGTCGCTCAAATTAATCGCCAAAGGGTTCCGAAAGCATGTCTTAATGTGGATGTTGAAGTAGCCAATGCTGAGAAGGTAGGGTTAGGGAAGACTAAGTCATTGATTGAGAGTGAAGCGAAGTATTTGGTGGGGACATATGCTAGAGCGCCGGTGGTGCTTGAGAGAGGGGAAGGTTGTAAAGTGTATGATGTCGAAGGGCGAGAGTATTTGGATCTGAGTTCTGGAATTGCTGTGAATGCATTAGGGCATGGGGATCCAGATTGGTTGAAAGCTGTGATCGAGCAAGCTGGTACACTTACTCATGTCAGCAATATTTATCACACATTACCTCAGGTGGAACTTGCGAAGCGCCTAGTGTCTTGTTCTTTTGCTGATCGTGTATTTTTTGCAAATTCTGGAACTGAATCCAATGAAGCGGCAATTAAATTTGCTAGGAAGTATCAGAGGCACACATGTACCGATGGGAAAGCGCCAGCAACAGAATTCATAGCTTTCAGTAATTGCTTCCATGGGAGAACAATGGGAGCAGTTGCTTTGACAAGCAAAGTGCAGTACAGAGCACCTTTCGAACCTGTTATGCCCGGAGTGACCTTTTTAGAATATGGAGATGCAAATGCTGCAAGAGAATTAATTAAGCAGGGAAAGATTGCTGCAGTTTTTGTGGAACCAATCCAAGGAGAAGGTGGAATATATAGTGCTACGAAAGAATTTCTAGCGTCTTTGCGTAGTGCTTGTGATGAAGCTGGGGCACTTCTTGTATTTGATGAGGTTCAATGCGGCTTAGGTCGATCTGGGTATCTTTGGGCCCATGAGGCATATGGCATCTTCCCCGATATAATGACCCTTGCCAAGCCTCTTGCTGGAGGTCTACCTATTGGAGCAGTCCTCGTGACCGAGAGAGTTGCTTCTGCTATAAATTACGGTGACCATGGAAGCACTTTCGCAGGAAATCCTCTTGTCTGTAATGCTGCTCTCGCTGTTTTGAATAAAATATCGAAACCTGACTTCCTCTCTTCTGTGTCTAAGAAAGGCCTCTATTTCAAAGAACTACTGAAGCAGAAGTTAGAAGGGAACCAGCACGTGAGAGAAATCCGTGGCGTTGGCCTAATTTTAGGGATAGATCTAGATGTACCAGCATCACCCCTTGTAGATGCATGTCGAAATTCCGGGCTCTTAGTACTAACTGCTGGAAAAGGAAATGTTATCAGGCTTGTTCCACCGTTGATCATAACTGAGCAGGAGCTTGAGCAAGCAGCTGAAATTCTAAGCAAAACTTTGCCAGTTCTTGATGAGAGTAATCAAAAGTAG	3303	0.4302	MGDKEVKEEAKSIPQWKKQYGGFRAAMFVFVLTALDNMGFVANMVSLVLYFYGVMHFDLSSSANTLTNFLGSTFLLSLVGAFISDTYLNRLTTCLLFGSLEVLALVLLTVQAALENLHPDACGKSSCVKGGVAVMLYSSLCFLALGCGGVRGSMTALGADQFDEKDPIEAKALARYFNWLLLSTTLGSVIGVTGVVWISTQRAWKWGFLVVTLASSVGFVTLALGKPFYRIRSPGESPISRITQVIVVAFKNRKLTLPVSHEELYEISDKDAKGVERIAHSNQMRFLDKAAIVRGNFEPKAWKVCTVTQVEEVKILTRMLPILGSTIIMNTCLAQLQTFSVQQGNAMNLKLGSFTVPAASIPVIPLLFLCILIPIYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSSISMAVAGIIEVKRRDQAKKDPSKPISLFWLSFQYAIFGIADMFTQVGLLEFFYREAPLTMKSLSTSFTWLSMSFGYFLSTVFVSVINNITKRITPSKQGWLHGFDLNQNNLNLFYWFLAILSCLNFFNFLYWANWYKYKSEDKNSEANLEGVGEITTPSLKKVGGEAKNHEMNMMMAMAKAKESSQTSEANSEGPSSSDETEDGKEKQKGKGRELMPLLNTMSAVHICLNHSISQQSYSIRKLFNTERESTLGKVQQVAQINRQRVPKACLNVDVEVANAEKVGLGKTKSLIESEAKYLVGTYARAPVVLERGEGCKVYDVEGREYLDLSSGIAVNALGHGDPDWLKAVIEQAGTLTHVSNIYHTLPQVELAKRLVSCSFADRVFFANSGTESNEAAIKFARKYQRHTCTDGKAPATEFIAFSNCFHGRTMGAVALTSKVQYRAPFEPVMPGVTFLEYGDANAARELIKQGKIAAVFVEPIQGEGGIYSATKEFLASLRSACDEAGALLVFDEVQCGLGRSGYLWAHEAYGIFPDIMTLAKPLAGGLPIGAVLVTERVASAINYGDHGSTFAGNPLVCNAALAVLNKISKPDFLSSVSKKGLYFKELLKQKLEGNQHVREIRGVGLILGIDLDVPASPLVDACRNSGLLVLTAGKGNVIRLVPPLIITEQELEQAAEILSKTLPVLDESNQK*	1101

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev09g1354	1100	Hamap	Acetylornithine/succinyldiaminopimelate aminotransferase [argD].	706	1094	IPR004636	GO:0006525\|GO:0008483
	Aev09g1354	1100	Pfam	Aminotransferase class-III	714	1091	IPR005814	GO:0008483\|GO:0030170
	Aev09g1354	1100	Gene3D	MFS general substrate transporter like domains	3	553	IPR036259	-
	Aev09g1354	1100	MobiDBLite	consensus disorder prediction	606	621	-	-
	Aev09g1354	1100	CDD	OAT_like	699	1091	IPR005814	GO:0008483\|GO:0030170
	Aev09g1354	1100	Pfam	POT family	93	507	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aev09g1354	1100	SUPERFAMILY	PLP-dependent transferases	707	1091	IPR015424	-
	Aev09g1354	1100	PANTHER	PEPTIDE/NITRATE TRANSPORTER	10	558	-	-
	Aev09g1354	1100	MobiDBLite	consensus disorder prediction	587	622	-	-
	Aev09g1354	1100	SUPERFAMILY	MFS general substrate transporter	11	551	IPR036259	-
	Aev09g1354	1100	TIGRFAM	argD: transaminase, acetylornithine/succinylornithine family	706	1090	IPR004636	GO:0006525\|GO:0008483
	Aev09g1354	1100	Gene3D	Aspartate Aminotransferase, domain 1	715	1081	IPR015422	GO:0003824
	Aev09g1354	1100	Gene3D	-	750	999	IPR015421	GO:0003824
	Aev09g1354	1100	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	10	558	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Aev09g1354	1100	ProSitePatterns	Aminotransferases class-III pyridoxal-phosphate attachment site.	917	954	IPR005814	GO:0008483\|GO:0030170
	Aev09g1354	1100	MobiDBLite	consensus disorder prediction	588	605	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev09g1354	Aev-Chr9	17403763	17423711	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev09g1354	14	553	Organic Solute Cotransporters	AT1G59740	42.545	1.38e-140	434

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev09g1354	K14638		-	gmx:100817702	947.577

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev09g1354	09	17403763	17423711	Aev09g1354	09	17403763	17423711	ECH
	Aev06g0724	06	4979175	4982135	Aev09g1354	09	17403763	17423711	PCT