LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev09g0527	ATGGACTTCCCAGATTCCGCTCTCTCTCTGAGGTCGAGCTTGACGTTCGGAGAAGCGCTGTGTTCTGTGTTCATTCCGCTGATTGGAATCGTAGAAGCTCTGTTCTTCAGCCTAGCTGGTTGCTTCGATCTCCATGGCAACAACAACAAGAAGAGCAAGAAGAACCAGATCCCTACCTCCTTCGATGACATCGTTCGCCTCGCCAAGGATTCTCCATTTACGATCAATGAAATTGAGGCGTTGCGTGAGCTGTTCAAGAAGTTGAGTAGTTCAATCATTGATGATGGACTCATTCACAAGGAAGAGCTGACATTGGCACTATTGAAGACCCCAGCTAGCGAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAGAAAAGAAATGGCGTTATAGAATTTGAGGAATTTGTGCATGCCCTCAGTATCTTTCATCCTTATGCTCCTTTAGAAAAGAAAATCGATTTTGCCTTTAGATTGTATGACTTGAGACAGACTGGGTATATTGAGCGAGAAGAAGTTGAGCAAATGGTGGTTGCGATAATGTCAGAGTGTAGCATGCATCTAGAAGCTGAAGTTCTTGAAACCATTATTGATAAGACATTTGAAGATGCTGATACTGACAAAGATGGAAAGATAAGTAAAGAAGAATGGAAGGCATTTGTTATTAAGCACCCAACACTATTGAAGAACATGACTCTTCCTTACCTCAAGTAA	720	0.4208	MDFPDSALSLRSSLTFGEALCSVFIPLIGIVEALFFSLAGCFDLHGNNNKKSKKNQIPTSFDDIVRLAKDSPFTINEIEALRELFKKLSSSIIDDGLIHKEELTLALLKTPASENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYAPLEKKIDFAFRLYDLRQTGYIEREEVEQMVVAIMSECSMHLEAEVLETIIDKTFEDADTDKDGKISKEEWKAFVIKHPTLLKNMTLPYLK*	240

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev09g0527	239	ProSiteProfiles	EF-hand calcium-binding domain profile.	194	229	IPR002048	GO:0005509
	Aev09g0527	239	SMART	efh_1	198	226	IPR002048	GO:0005509
	Aev09g0527	239	SMART	efh_1	117	145	IPR002048	GO:0005509
	Aev09g0527	239	SMART	efh_1	154	182	IPR002048	GO:0005509
	Aev09g0527	239	Pfam	EF-hand domain pair	153	222	IPR002048	GO:0005509
	Aev09g0527	239	Gene3D	-	64	239	-	-
	Aev09g0527	239	ProSiteProfiles	EF-hand calcium-binding domain profile.	113	148	IPR002048	GO:0005509
	Aev09g0527	239	CDD	EFh	154	223	IPR002048	GO:0005509
	Aev09g0527	239	PRINTS	Recoverin family signature	168	186	-	-
	Aev09g0527	239	PRINTS	Recoverin family signature	214	234	-	-
	Aev09g0527	239	PRINTS	Recoverin family signature	121	142	-	-
	Aev09g0527	239	SUPERFAMILY	EF-hand	67	237	IPR011992	-
	Aev09g0527	239	ProSiteProfiles	EF-hand calcium-binding domain profile.	150	185	IPR002048	GO:0005509
	Aev09g0527	239	PANTHER	CALCINEURIN B	5	239	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Aev09g0527	239	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	5	239	-	-
	Aev09g0527	239	ProSitePatterns	EF-hand calcium-binding domain.	207	219	IPR018247	-
	Aev09g0527	239	Pfam	EF-hand domain pair	95	139	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev09g0527	Aev-Chr9	4691003	4693367	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev09g0527	9	202	EF-hand Containing Proteins	AT4G33000	61.856	6.38e-82	241

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev09g0527	K06268		-	gmx:100801943	372.859