Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0388 ATGGCACAACAAATAAGTCCAAAAACCAAATCTTTTACACTTATAGCTATTATCATTATATATGAATTAGTACTTTTTGTCTTCAAAATTAGAGCAACAAAAGCATCTTCTTTTGAAACATTAAATATTGTCAATTTTGGTGCCAACCCAAATGGTGAAATTGATTCCACAAATGCATTTATTAGTGCATGGAATAGAGCATGTAGCTCAATAGCACCATCTACTATATATGTTCCACAAGGAAGATTCTTAATTGGTAATAGTGTGGTGTTTAAGGGGCAATTCTGCAAGAATAATGGCATAACTATAAGAATTGATGGGGCAATTGTTGCAAATTCAAATTATGGAGTTATTGGAAATGATGGGAATTGGTTGCTATTTGATGATGTTAATGGGGTTTCAATAATTGGTGGAGTACTTGATGGACAAGGCAATGGTCTTTGGGATTGTAAGAGATCTGGCAAAGGGTGCCCAATTGGTGCTACGAACTTAGGGTTTACAAATTCCAGAGACATTATTATCAATGGGTTAACCTCTCTAAACAGCCAAATGTTCCATATAGTAATAGATAGATGCCATAATGTGAAAGTGCAAGGTGTTAAGGTCTCAGCTGCAGGGAACAGTCCCAACACTGATGGAATTCATGTTCAACTCTCATCAGATGTTACCATTTTCAGCTCCAACATTGCAACCGGTGATGATTGCATCTCAATTGGCCCTGGAACAACTAATTTGTGGATAGAGAATATTGCTTGTGGACCAGGTCATGGAATCAGTGTTGGAAGTTTAGGTAAAGAAGTTGAAGAGGCTGGTGTGCAAAATGTCACAGTTAAAACAGTAACATTCACAGGAACAGAAAATGGTGTAAGAATTAAGTCTTGGGGGAGACCAAGCAATGGTTTTGCAAGGGACATCCTTTTCCAACATGCTACCATGATTAATGTCCAAAACCCAATTGTCATTGACCAAAATTATTGCCCTGATGACAAGGGTTGTCCTGGTCAGGTTTCAGGAGTTGAAATCAGTAATGTTATGTACCAAGATATTCATGGAACTTCAGCAACAGAAATTGCAGTTAGATTCAATTGTAGTCCCAAGAATCCATGTACTAAAATAACATTGGAAGATGTTATGCTTACTTGTGAGAACAAACAAGCCCAATCTTCATGTAATCATGTTGGAGGAATCACTTCTGGTTTTGTTCAACCCAATGGTTGTTTTTGA 1224 0.3717 MAQQISPKTKSFTLIAIIIIYELVLFVFKIRATKASSFETLNIVNFGANPNGEIDSTNAFISAWNRACSSIAPSTIYVPQGRFLIGNSVVFKGQFCKNNGITIRIDGAIVANSNYGVIGNDGNWLLFDDVNGVSIIGGVLDGQGNGLWDCKRSGKGCPIGATNLGFTNSRDIIINGLTSLNSQMFHIVIDRCHNVKVQGVKVSAAGNSPNTDGIHVQLSSDVTIFSSNIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEVEEAGVQNVTVKTVTFTGTENGVRIKSWGRPSNGFARDILFQHATMINVQNPIVIDQNYCPDDKGCPGQVSGVEISNVMYQDIHGTSATEIAVRFNCSPKNPCTKITLEDVMLTCENKQAQSSCNHVGGITSGFVQPNGCF* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0388 407 ProSitePatterns Polygalacturonase active site. 249 262 IPR000743 GO:0004650|GO:0005975
Aev09g0388 407 Gene3D - 28 405 IPR012334 -
Aev09g0388 407 Pfam Glycosyl hydrolases family 28 68 393 IPR000743 GO:0004650|GO:0005975
Aev09g0388 407 PANTHER - 16 406 - -
Aev09g0388 407 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 16 406 - -
Aev09g0388 407 SUPERFAMILY Pectin lyase-like 32 407 IPR011050 -
Aev09g0388 407 SMART pbh1 272 293 IPR006626 -
Aev09g0388 407 SMART pbh1 219 240 IPR006626 -
Aev09g0388 407 SMART pbh1 302 323 IPR006626 -
Aev09g0388 407 SMART pbh1 242 262 IPR006626 -
Aev09g0388 407 SMART pbh1 192 218 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0388 Aev-Chr9 3331643 3335393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0388 23 404 Glycoside Hydrolase AT2G43870 62.565 4.01e-179 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0388 K01184 - gmx:100784002 645.966