Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2288 ATGTTACAAGCACCATCATCACTTGGAATTATTGGTGGAGGAAGAACATTGATGATGGAGGACGAGAAGGGGAAGTTTCCGGTAACCGGCCTTAGTGTTAGGCGACTCAGATCACGCCTCTCGCCGCCGCCTGCTCCTCACAGAAATCCGCAATTTCATTGGCTCCAATCTGAACTCAACAATATATGCAAATCCCTATTAAGGGCCAAACAGTTTCATGCTTTTCTTTTGAGGACCCATCTCTTAGATGACCCTTTTTATGCTACCAAAATTGTTAGGCTCTATTCAGCCAACAATGACATTAACTCTGCCTACCAAGTGTTTGACAAAACTCCCACTCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTATGCTCAGTCCCGGAGATTTGGCAATGCAATCTCTCTATTTAGAATCATGCTTGGTGCTGACATAAGTCCTGACAATTACACTTATGCTTGCATTATTCGTGCGTGCTGCGACAACTTTGATTTTGGTATGCTTAGACTTGTTCATGGAGGGGCTGTGGCTTCTGGGTTGGGAATGGACCCTATTTGTTGCAGTGCACTTGTGACTGCTTATTCAAAACTTGGTCTTGTTAATGAAGCGCATAGAGTGTTTAATGGGATCATTGAACCGGATTTGGTTTTGTGGAATTCTCTGATTTCTGGTTATGTTTGCTCTGGTGCATGGTATATGGGGATGCAGATGCTTAGATCAATGAGACATTTTGGGAAGATGCCTGATGAGTATACACTAGCTGGGTTGCTCGCGGGTATTGAAGATTCTAGCTCGCTTAGCATTGGCCAAGGATTACATGGTTTAAGTCTGAAGGGTGGACTAGATTCGGATTCTCATGTAGGTAGTTTACTGGTGAGTATGTACTCAAGATGTAAGTGCATGGTTTCGGCATATGGCGTCTTTTGCAGTATTTTCCAACCTGATTTGGTGACATGGTCTGCTCTTATAGCTGGGTATTCTCAGTCTGGGGAGTATGAGAAATCATTGTTCTTTTTCAGGAAATTAAACATGGAAAATAAGAAGGCTGATTCTGTTTTGATTGCTAGTGTATTGGCTGCTATAGCTCAGGCAGCGAATGTTGGACCGGGATGTGAGATACATGGTTATGTTATTAGGCACGGATTGGAATCAGATGTCAAGGTTTCTTCAGCTCTCATAGACATGTACTCAAAGTGTGGCTTCTTGCAGTTGGGAATTTGTGTTTTCGGGATGATGCCAGAACGGAACATAATTTCTTATAACTCAGTTATTTCTGGTCTTGGCTTGCATGGTTGTGCTTCTGAGGCTTTCAGGATGTTTGATAAGATGCTGGAGAAAGGATTAGTACCTGATGAAGCCACATTTTCGGCTCTCCTTTGTGCTTGTTGTCATGCCGGCCTTGTCAAAGAAGGTCGGGAGATTTTCCGGCGAATGAAAGATGAGTTTGGCATCATAGCCAGGCCAGAGCACTATGTTTACATGGTGAAGCTTCTTGGAAGTGCTGGGGAGTTGGAAGAGGCTTACAATCTCACTCAGTCCTTACCGGAACCAGTAGACAAGGCCATCCTTGGAGCCTTATTGTCATGCTGCAATTCTTGTGGAAATTCCGAGCTGGCAGAAACTGTAGCTCACCGGCTTTTTGAAAGTAATCCTGATGATAATGCTTACAGGGTTATGCTTTCTAATATATATGCTAGTGATGGGAGGTGGGATGATGTGAAGAATTTGAGGGATAAAATAACAGGTCTCAGAAAAATGCCTGGACTAAGCTGGGTTGAAGGTAGCTTTTGCTAA 1800 0.435 MLQAPSSLGIIGGGRTLMMEDEKGKFPVTGLSVRRLRSRLSPPPAPHRNPQFHWLQSELNNICKSLLRAKQFHAFLLRTHLLDDPFYATKIVRLYSANNDINSAYQVFDKTPTRSVYLWNSMIRAYAQSRRFGNAISLFRIMLGADISPDNYTYACIIRACCDNFDFGMLRLVHGGAVASGLGMDPICCSALVTAYSKLGLVNEAHRVFNGIIEPDLVLWNSLISGYVCSGAWYMGMQMLRSMRHFGKMPDEYTLAGLLAGIEDSSSLSIGQGLHGLSLKGGLDSDSHVGSLLVSMYSRCKCMVSAYGVFCSIFQPDLVTWSALIAGYSQSGEYEKSLFFFRKLNMENKKADSVLIASVLAAIAQAANVGPGCEIHGYVIRHGLESDVKVSSALIDMYSKCGFLQLGICVFGMMPERNIISYNSVISGLGLHGCASEAFRMFDKMLEKGLVPDEATFSALLCACCHAGLVKEGREIFRRMKDEFGIIARPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNSCGNSELAETVAHRLFESNPDDNAYRVMLSNIYASDGRWDDVKNLRDKITGLRKMPGLSWVEGSFC* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2288 599 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Aev08g2288 599 TIGRFAM PPR: pentatricopeptide repeat domain 420 454 IPR002885 -
Aev08g2288 599 TIGRFAM PPR: pentatricopeptide repeat domain 456 483 IPR002885 -
Aev08g2288 599 Gene3D Tetratricopeptide repeat domain 372 471 IPR011990 GO:0005515
Aev08g2288 599 Gene3D Tetratricopeptide repeat domain 170 270 IPR011990 GO:0005515
Aev08g2288 599 Gene3D Tetratricopeptide repeat domain 274 371 IPR011990 GO:0005515
Aev08g2288 599 Gene3D Tetratricopeptide repeat domain 48 169 IPR011990 GO:0005515
Aev08g2288 599 Pfam PPR repeat 188 212 IPR002885 -
Aev08g2288 599 Pfam PPR repeat 319 344 IPR002885 -
Aev08g2288 599 Pfam PPR repeat 218 247 IPR002885 -
Aev08g2288 599 Pfam E motif 537 595 IPR046848 -
Aev08g2288 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Aev08g2288 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Aev08g2288 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Aev08g2288 599 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 52 594 - -
Aev08g2288 599 PANTHER OS01G0545900 PROTEIN 52 594 - -
Aev08g2288 599 Gene3D Tetratricopeptide repeat domain 472 595 IPR011990 GO:0005515
Aev08g2288 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 483 IPR002885 -
Aev08g2288 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Aev08g2288 599 Pfam PPR repeat family 115 162 IPR002885 -
Aev08g2288 599 Pfam PPR repeat family 418 466 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2288 Aev-Chr8 22131391 22138305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2288 75 595 Glycoside Hydrolase AT3G49170 30.508 8.73e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2288 - - gmx:100820049 900.197