Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1227 ATGGCGACGCCGTCGTTGGACGATGAAACAACCAAGAAAGTCCTAAGACAAGTCGAGTTCTACTTCAGCGACAGTAACCTTCCCACCGACAATTTCATGCGCAAAACCGTCTCCGAAAGCGAAGATGGCATGGTTGATTTGGCTTTGATTTGTTCATTCAATAGAATGAGAAAGCACCTTAAGCTGGGTGATGTGAAGCCTGATGAGGTTTCCGAAGATACTGTTGCTGCTGTTGCTCAGGTTTTGAGGAATTCTGCATCACTCAAGGTCTCTGAAGATGGTAAAAAGGTTGGCAGGACAACTGAACTTCCGAAGCCAGAGGAGGTAATTGAGCAGGTGGAGATACGAACACTTGCTGCATCCCCATTTGAGTATGACTTGAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCTAAGGTCAATAGTGTCCGGCTGCCTCGGCATGTTGGTGACAAAAGGTTCTTCTGTGGCACAGCCCTTATTGAGTTCTCATCAGACGAAGAAGTAGAGAAAATTTTGAAGCAAAAACTTGTCTATGCTGGGGCAGAGTTAGATCTAAAACCAAAGAAGGACTTTGATGCAGAGAGAGAAAAAGAATTAGCTGATTTTGAAAAATCTCGTCCTCCTGTGGGGTCAAATCACCAGAATAACAACTCAAATGAAGAAGAAAGCTACCCTAAGGGCTTAATTATTGCCTTCAAACTGAAGAGCATTTCAGATGAAGTTCCTTCTAAACAAAATGGTGCTGATCAACATGCCAATGGAAATAGTGATGTCTCCAAGACTGATGAAAATAGTACCTCTGAAGTTGTTTCTGGGGAAAGTGGTGAGAAGGTATCAGCAAATGATGAGAATGATGAAGAAAACAAAGAGACAGAAGAAGTAAAGGAAACTGAAACTGAAGAAAAGGGTCAAGAAACTGAGGAAAAATTTTCTGCTGCTTCATTCAAGGACAACATGAATGTTGTCTTGCGTGAGGATTTGAAGGCTGTCTTCGAGAAGTTCGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCTGAGTCAGGATACATCCGGTTTGAAGAAGCTGACGCTGCTCAGAAAGCTCGTGCTGCTGCAGTACTTACTGAAAAGGATGGCTTGGTTGTGAAGAATTTTATCGCTACTCTTGATCCAGTTACTGGTGAGGCTGAAAGAGAATACTGGAGCCTTCTCCGTGGCAATCAAGACAAGCACCACCGAGGATTTAAGAATAACCGAGGAAGGGGAGGAAGGCATGGTAGAGGCGGAAAACATGGACGCTCTAGGGATAATGGATCTGGTGGAGATCGTCCAAGTAAATCTCAGAGAAATTAG 1344 0.4345 MATPSLDDETTKKVLRQVEFYFSDSNLPTDNFMRKTVSESEDGMVDLALICSFNRMRKHLKLGDVKPDEVSEDTVAAVAQVLRNSASLKVSEDGKKVGRTTELPKPEEVIEQVEIRTLAASPFEYDLKLEDVEAFFGQYAKVNSVRLPRHVGDKRFFCGTALIEFSSDEEVEKILKQKLVYAGAELDLKPKKDFDAEREKELADFEKSRPPVGSNHQNNNSNEEESYPKGLIIAFKLKSISDEVPSKQNGADQHANGNSDVSKTDENSTSEVVSGESGEKVSANDENDEENKETEEVKETETEEKGQETEEKFSAASFKDNMNVVLREDLKAVFEKFGTVKYIDFKIGAESGYIRFEEADAAQKARAAAVLTEKDGLVVKNFIATLDPVTGEAEREYWSLLRGNQDKHHRGFKNNRGRGGRHGRGGKHGRSRDNGSGGDRPSKSQRN* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1227 447 MobiDBLite consensus disorder prediction 429 447 - -
Aev08g1227 447 SUPERFAMILY RNA-binding domain, RBD 327 405 IPR035979 GO:0003676
Aev08g1227 447 Coils Coil 280 304 - -
Aev08g1227 447 CDD RRM1_La 117 186 - -
Aev08g1227 447 PANTHER LUPUS LA PROTEIN-RELATED 2 446 IPR045180 -
Aev08g1227 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev08g1227 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev08g1227 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Aev08g1227 447 CDD LA_like_plant 10 99 - -
Aev08g1227 447 MobiDBLite consensus disorder prediction 411 428 - -
Aev08g1227 447 MobiDBLite consensus disorder prediction 406 447 - -
Aev08g1227 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Aev08g1227 447 Pfam RNA binding motif 325 419 IPR014886 GO:0003723
Aev08g1227 447 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Aev08g1227 447 PANTHER BNAANNG34180D PROTEIN 2 446 - -
Aev08g1227 447 MobiDBLite consensus disorder prediction 197 226 - -
Aev08g1227 447 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Aev08g1227 447 MobiDBLite consensus disorder prediction 244 314 - -
Aev08g1227 447 MobiDBLite consensus disorder prediction 211 226 - -
Aev08g1227 447 ProSiteProfiles xRRM domain profile. 309 430 IPR014886 GO:0003723
Aev08g1227 447 SMART la 8 100 IPR006630 -
Aev08g1227 447 Gene3D - 2 104 IPR036388 -
Aev08g1227 447 MobiDBLite consensus disorder prediction 298 314 - -
Aev08g1227 447 Gene3D - 109 204 IPR012677 -
Aev08g1227 447 Gene3D - 297 417 IPR012677 -
Aev08g1227 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 177 IPR000504 GO:0003723
Aev08g1227 447 SUPERFAMILY RNA-binding domain, RBD 108 191 IPR035979 GO:0003676
Aev08g1227 447 SMART rrm1_1 321 380 IPR000504 GO:0003723
Aev08g1227 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Aev08g1227 447 MobiDBLite consensus disorder prediction 244 277 - -
Aev08g1227 447 Pfam La domain 14 84 IPR006630 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1227 K11090 - gmx:100786016 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g1227 08 7684461 7687532 Aev08g1227 08 7684461 7687532 ECH