Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1163 ATGGATTTGTTAAGCCTCAGACTCAATTACTATAGTACTGTTATTCACTCTTCTCATGCTTTTAACAACTCACCTATCAGGCTTTCTTCATCTTCTTCCAGTGGAGGCAGGGAAGCTAGTTTCAACCCTGCTAGGTTATCTTCGCTTTCAACTGTTTATTATGAGGAAGGAGATTCTTCCCAGAAAGATTTAAGAGCATTCAGCTGCCTCTCATCCTCATTGGAAACTTTGGATAATGATTCTTTAGAAAGAGATGGAATCAAGGTTAAGAAGGGAAAGAGGTTGCTGAGTAGTGTCCATGACATGCTTCATAATACCCAAATGCCTTTTGGAGAGGAGATTTCTACCTCCTCCATGAAGTACCAATCTTTCAAAGCAATACATTTTCGTTTGTTGATGGAAAATCTTGGTACTTTGGAAGAAACTTTTGCTGATTCTGAAGTGCTCAAGTTGAAAAATGACATCACATTGCAACTAGGAAAGCTTGGGATTCTAGAATATTTCAATGCCTGTTTGTCAAGATCTCTTGAACCCTCACATACTGTGGGCGTGGACATCGTTGATGAACGTCCTGGTCAAGTTGGAGAGCAGCAGAAAAACAACAAAGTTGGTGAGTCCATGGATAAAGTTTTTGTTCAGTCTACCAGGAAAAAACGAAGTAAAACAAGATCAAAAAGAGCATTTACTGATATGGAAGTTCAGTCACTGCTGCCTTCAGAAGCTGATCAGGAATATCTATTGTGTTCTTCACCTTCTTCTGTAAAAAGAGCAACAAATTGTAAAAATAGGAGAACAATGGTTGCTAGAAGGGAGGCAGAAATGTCAAGAGCAGTAAAGGTTCTAGCAGAGTTGGAGAAAATTAGAGCAGCAATAGAAGAGGATACTGAGCAAGGAGCAAGCTTGAGTACCTGGGCAGAAGCATGTGGAGTTGATGAGAAGGTGCTATATCAGCGTTTGCATTATGGCCGGTATTGTCGCGATGAGCTTATACGAAGTACTCGTTCCTTAGTTCTTTACCTTGCTAGGAAATACAGGGGTCTGGGAATAGCATTGGAAGATTTGCTTCAGGCAGGATATGTAGGTGTTCTTCAAGGTGCTGAGAGATTTGACATTACAAGGGGCTACAGATTCTCAACTTATGTGCAATATTGGATAAGGAAATCGTTGTCTAGAATGGTGACACGATATGCTCGGGGAATCGTAATTCCTTGGTCATTGAACAGGGCCATAAATCAGATACAGAAAGCACAAAAATCCCTGAAAAGTACCTCTATGAAATACCCGGATGATAATGAAATTGCGAAGATCACAGGTCTCTCTCTGGATAAGATTAGATCAGCTAGCAATTGTCTGAGAGTGGTTGCTTCAACTGATCAGAAGATGGGGGACTGGCCTAGTGTAAAATATACGGAATTTACGCCTGATACATCAATAGAGAGTCCTGAAGAAGCTGCTATGAAACAAAACATGAGAAAGGACATATATGATCTCTTGAAAAGCTTAGATTCAAGGGAGAGTCAAGTATTAATACTGCGATTTGGTCTCAGTGATCACCAACCAAGGTCACTAGAGGAAATAGGAAAGCATTTCAAAGTTAGCAAAGAATGGGTGAGGAGGATAGAGAAGAAAGCTCTCACAAAATTAAGGAACAGAACAGACATATCAAATTTAAATTTCTATTTGAATTTGGATTTGTAG 1698 0.3987 MDLLSLRLNYYSTVIHSSHAFNNSPIRLSSSSSSGGREASFNPARLSSLSTVYYEEGDSSQKDLRAFSCLSSSLETLDNDSLERDGIKVKKGKRLLSSVHDMLHNTQMPFGEEISTSSMKYQSFKAIHFRLLMENLGTLEETFADSEVLKLKNDITLQLGKLGILEYFNACLSRSLEPSHTVGVDIVDERPGQVGEQQKNNKVGESMDKVFVQSTRKKRSKTRSKRAFTDMEVQSLLPSEADQEYLLCSSPSSVKRATNCKNRRTMVARREAEMSRAVKVLAELEKIRAAIEEDTEQGASLSTWAEACGVDEKVLYQRLHYGRYCRDELIRSTRSLVLYLARKYRGLGIALEDLLQAGYVGVLQGAERFDITRGYRFSTYVQYWIRKSLSRMVTRYARGIVIPWSLNRAINQIQKAQKSLKSTSMKYPDDNEIAKITGLSLDKIRSASNCLRVVASTDQKMGDWPSVKYTEFTPDTSIESPEEAAMKQNMRKDIYDLLKSLDSRESQVLILRFGLSDHQPRSLEEIGKHFKVSKEWVRRIEKKALTKLRNRTDISNLNFYLNLDL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1163 565 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 Coils Coil 274 294 - -
Aev08g1163 565 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 13 562 - -
Aev08g1163 565 Pfam Sigma-70, region 4 497 550 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 Pfam Sigma-70 region 2 329 397 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 Coils Coil 406 426 - -
Aev08g1163 565 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 13 562 - -
Aev08g1163 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 402 475 IPR013324 -
Aev08g1163 565 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 268 398 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 Gene3D - 402 479 IPR036388 -
Aev08g1163 565 Gene3D - 239 398 - -
Aev08g1163 565 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 552 IPR013324 -
Aev08g1163 565 Pfam Sigma-70 region 3 409 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 326 551 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aev08g1163 565 CDD Sigma70_r4 491 549 - -
Aev08g1163 565 Gene3D - 483 564 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1163 Aev-Chr8 7271215 7274664 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1163 K03093 - gmx:100802522 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g1163 08 7271215 7274664 Aev08g1163 08 7271215 7274664 ECH