LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g1019	ATGGCGCAGTTGCCGGCACTCCGTCTTCTCCTCCGTCACATTCACTGCTTCTCCGCACCGCCGCGCCCAGCAATGGCTTCACTCTGTTTCCCTCGTGCCACGTGGCACTTCATTCTCTCAGCTAAACGCGCGCACCCCAAAACTCTCAAACTCCATGCCACTCCCACTTCCAAAGCGAATCACACGCTTGTGCTGAAGAAAGACGAGCGCGTGGTCGACGACGGAACTGGTGAGGTTGCGAATCTGAACCCAACGATTGCGGCGATTGTAACATCGCTGGGAGGTCCACCTGGTGCCGTTGGCATCGTTCGATTGTCGGGTCCCTCTGCGGTTTCTGTTGCGGCTCGAGTGTTTCGACCTGCGAGGGCCAACAAGAAGAGCAAGGACAAGAGTTGCTCTGTTTCGCCTACGTGGCAACCCACCAGCCATGTCGTGGAATATGGTGTCGTTTTGGATTCGGATGGGAATGTGATCGACGAGGTTTTGGCAGTGCCAATGCTGGCCCCGAGATCCTACACTCGCGAGGACGTGGTTGAGCTTCAATGTCATGGGAGCGAGGTGTGTCTGCGTCGAGTACTCAGAACTTGTCTGGAAGCTGGAGCAACGCTTGCTCAACCAGGGGAGTTTACACTTCGTGCTTTTCTAAATGGTCGTTTAGATCTCTCTCAAGCTGAAAATGTTGGGAGACTGATTACAGCTAAATCTGTCGCTGCTGCGGATGCTGCACTGGCAGGAATCCAGGGTGGTTTCTCTGCTCTTGTCAAATCATTGAGAATGCAGTGCATTGAGTTGCTAACTGAGATTGAGGCTCGTTTAGATTTTGATGACGAGATGCCTCCTTTAGATTTAAATCTGATAATGGAAAAAATACATACCATGTCACAAGATGTTGAGAATGCATTGGAGACAGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGGACCACACGTGATGTGATTGAAGCTAGTGTCAGTGTCAATGGCATCCCTATAACTCTTCTTGATACTGCTGGCATAAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCAGAAGCTGTTGCAAGGGGTGCTGATTTAATTATCATGACAGTGAGTGCTGTTGAAGGATGGACTTCTGAAGATACCAAACTTCTAGAAAGGATTCAATCTGCTAAGAGATCAACTGGATCTTCGACCCCAGTAATACTTGTGGTCAACAAGATAGATTGTAATCCTTGTGCTGAAACTGATTGGGACAAAAGATGTGACAGTCACAATTTCTTCTTCAGCAAACGTGTGTTTACATGTGCTGTTTCCGGTCAAGGATTACAAGACTTGGAGAGGGCAGTATTAGAGCTTGTGGGTCTTGATGGCATTTCTGCTGGGGGTCGCAGATGGACTGTTAATCAGAGACAATGTGAACAACTTGTTCGGACTAAGGAAGCTCTTGAGAGACTACAATCATCAATAAAGGAGGAGTTGCCTCTAGATTTTTGGACTATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGATGATATAGCTGAGGAGGTTTTGTCTAATATATTTGGTAAGTTTTGTATTGGTAAATAG	1692	0.4722	MAQLPALRLLLRHIHCFSAPPRPAMASLCFPRATWHFILSAKRAHPKTLKLHATPTSKANHTLVLKKDERVVDDGTGEVANLNPTIAAIVTSLGGPPGAVGIVRLSGPSAVSVAARVFRPARANKKSKDKSCSVSPTWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSALVKSLRMQCIELLTEIEARLDFDDEMPPLDLNLIMEKIHTMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKRSTGSSTPVILVVNKIDCNPCAETDWDKRCDSHNFFFSKRVFTCAVSGQGLQDLERAVLELVGLDGISAGGRRWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGDDIAEEVLSNIFGKFCIGK*	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g1019	563	Gene3D	-	314	491	IPR027417	-
	Aev08g1019	563	TIGRFAM	small_GTP: small GTP-binding protein domain	314	441	IPR005225	GO:0005525
	Aev08g1019	563	Pfam	MnmE helical domain	221	560	IPR025867	-
	Aev08g1019	563	Hamap	tRNA modification GTPase MnmE [mnmE].	84	563	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Aev08g1019	563	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	98	563	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Aev08g1019	563	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	81	563	-	-
	Aev08g1019	563	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	313	484	IPR031168	-
	Aev08g1019	563	Gene3D	tRNA modification GTPase MnmE domain 2	219	563	IPR027368	-
	Aev08g1019	563	Gene3D	Probable tRNA modification gtpase trme; domain 1	71	218	IPR027266	GO:0005515
	Aev08g1019	563	CDD	trmE	311	484	IPR031168	-
	Aev08g1019	563	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	81	563	-	-
	Aev08g1019	563	Coils	Coil	502	522	-	-
	Aev08g1019	563	Pfam	50S ribosome-binding GTPase	315	436	IPR006073	GO:0005525
	Aev08g1019	563	Pfam	GTP-binding protein TrmE N-terminus	85	218	IPR018948	-
	Aev08g1019	563	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	479	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev08g1019	Aev-Chr8	6094483	6097983	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev08g1019	K03650		-	gmx:100779193	846.654

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev08g1019	08	6094483	6097983	Aev08g1019	08	6094483	6097983	ECH