Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1000 ATGGACGCTCAACCAGGTCTATCTCTCGGATTATCCGCGCAGATGTCATCCCCTGTTTCTATCTCTGCTTCACTCTGTGACAGCTCCTTCTCGTTCCAGGTCTGTTCCACCAATCGATCTTCCTCGAACCCGATTCAATGGCAGAATCTACTCGACGAGGAAGACGACAAGGACGTGGTCAAGCTCAAACACGAAGAACAAGAAGAAGGAGAAGGTGAAACCAAAGACGAAGAAGAGGAGCAACACCGAGAAGAGGAACAGGAACAGGAACAGGGGAGCCACCAAACAATCAACTTCATGGGAAGCTCACTTCCCTTGAAGAGGCAGATAGAGGGTCCCTCGTGCTTCCCTTCGAAGCGTCGAGCTTCGGTGCAAACATGGGGCAACCAGCCACTAGGACTCGCAGACCCCGAAGTGTTCGACATCATGGAGAAGGAGAAGAAGAGACAGTTCAGGGGAATCGAGCTCATCGCTTCAGAGAATTTCGTATGCAGGGCAGTGATGGAAGCTCTGGGAAGCCATTTGACCAACAAGTACTCTGAGGGAATGCCAGGGGCGAAGTACTACACTGGGAACCAACACATCGACCAGCTCGAATTCCTCTGCTGCGAGCGTGCTCTGGTCGCATTTGATCTTGATTCAAACAAGTGGGGTGTGAATGTCCAACCTTACTCTTGCACTTCTGCAAATTTCGCTGTTTTCACTGGTCTTTTGCACCCAGGGGATAGGATCATGGGTTTGGACTCTGCTTCTGGGGGTCACTTGAGTCATGGCTATTATACCATGGGTGGGAAAAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTCTTAGTTACAAGGTGAATCCGCTTTCTGGGTATATTGATTATGAGAAGCTTGAAGAGAAAGCTATGGACTTCAGACCTAAGATACTGATTTGTGGTGGGAGTTCTTATCCGAGGGAATGGGATTATGGAAGATTCAGGATGATTGCTGATAAATGTGGCGCGGTGTTGATGTGTGACATGGCTCATATTAGCGGTCTTGTGGCGGCTAAGGAGGTGGTTAGTCCATTTGATTACTGTGATATAGTTACCTCAACAACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGAATCATCTTTTACAGAAGAGGAGTGAAGCCAAGGAGGCCAGGCCTTGTTCTTAATCATGGAGATGATAGTAATTATGATTACGAGGAGAAGATAAACTTTGCTTTATATCCATCATTACAAGGAGGCCCTCACAATAATCACATTGCTGCCCTTGCTGTAGCTTTGAAACAAGTTGCAACTCCAGAGTACAAGGCATACATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCATCTGCTTTGTTAAAAAGAAAGTGCAGATTGGTGACTGATGGGACTGACAATCATCTTTTGCTCTGGGATCTAACTGCACTTGGCTTAATTGACAGAAAATTTGAGAAGGTCTGTGAGGCGTGTCACATCACTCTGAACAAATGTGCCATTTATGGTTCTATTTCTCGTGGAGGTGTGAGAATTGGTACCCCTGCAATGACATCAAGAGGCTGTTTGGAGGAAGATTTTGAGACCATAGCTGACTTTCTTTTGAGGGCTGCTCAGATTACCAGCAACATTGTACAGAAGCAACAATTGAAATCGTTCAAAGATTTTGTCAAGAGTCTTCAGAATAACAAAGATATTTCCGAGCTCAGAAATCAGGTTGAGGCATTTAGTTCCCAGTTTGCAATGCCAGGATTCGATATTTGA 1761 0.46 MDAQPGLSLGLSAQMSSPVSISASLCDSSFSFQVCSTNRSSSNPIQWQNLLDEEDDKDVVKLKHEEQEEGEGETKDEEEEQHREEEQEQEQGSHQTINFMGSSLPLKRQIEGPSCFPSKRRASVQTWGNQPLGLADPEVFDIMEKEKKRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQHIDQLEFLCCERALVAFDLDSNKWGVNVQPYSCTSANFAVFTGLLHPGDRIMGLDSASGGHLSHGYYTMGGKKVSAASIFFETLSYKVNPLSGYIDYEKLEEKAMDFRPKILICGGSSYPREWDYGRFRMIADKCGAVLMCDMAHISGLVAAKEVVSPFDYCDIVTSTTHKSLRGPRGGIIFYRRGVKPRRPGLVLNHGDDSNYDYEEKINFALYPSLQGGPHNNHIAALAVALKQVATPEYKAYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLIDRKFEKVCEACHITLNKCAIYGSISRGGVRIGTPAMTSRGCLEEDFETIADFLLRAAQITSNIVQKQQLKSFKDFVKSLQNNKDISELRNQVEAFSSQFAMPGFDI* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1000 586 SUPERFAMILY PLP-dependent transferases 127 583 IPR015424 -
Aev08g1000 586 Hamap Serine hydroxymethyltransferase [glyA]. 131 583 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aev08g1000 586 Gene3D - 161 440 IPR015421 GO:0003824
Aev08g1000 586 MobiDBLite consensus disorder prediction 37 96 - -
Aev08g1000 586 MobiDBLite consensus disorder prediction 50 70 - -
Aev08g1000 586 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 356 372 IPR019798 GO:0030170
Aev08g1000 586 Coils Coil 75 95 - -
Aev08g1000 586 CDD SHMT 136 559 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aev08g1000 586 Pfam Serine hydroxymethyltransferase 135 532 IPR039429 -
Aev08g1000 586 MobiDBLite consensus disorder prediction 71 85 - -
Aev08g1000 586 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 106 586 - -
Aev08g1000 586 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 106 586 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aev08g1000 586 Gene3D Aspartate Aminotransferase, domain 1 136 582 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1000 Aev-Chr8 5972117 5975119 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1000 K00600 - gmx:100776419 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g1000 08 5972117 5975119 Aev08g1000 08 5972117 5975119 ECH