Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0910 ATGGAGTTGCCGGAGTGTCCTGTGTGCCTTGAACCCTACGATGAACACGTGGCGATCCCTCGTGTGCTCTCGTGCGGCCACTCCGTCTGTGAATCCTGCATCGTGGAGCTACCTCAGCGGTACCCGAACACCGTTCGGTGCCCCGCGTGCATGCAGCTCGTGAAGTACTCTTCTCAGCAAGGACCTTCTTCCCTTCCAAAGAACATTGACCTCCTCAGGATTTGCCTTCAACACTCTCCTTCTTCTTCTTCTACTTCTTCTGATCACGCACGGAAAAAACAGAATCAACGGTCAGCAATCAACGGTGGTGATGAATTGTCCGGATTCCGTACTCGGGTCTGGTCCGAAGAGTTCTATGCTAAGTGGAAGGATTGGATTCTCCTGCACGATCCCGTTTCAGTTGAGTTCGAACCTGAACCCGAACCAGGTGGGTTTGGGTTTGTGCTGCGAGGGCGATTCGGTTTGGGTTCTTCGTTGAAGGGTAGGGTTAGTGTTTGTTTAAGAGATAGCAAAGATTTGATCTTTGTTCCTTTTTTTCATTTACCTCATAAGGTGAATCGTTGCGAGTTTAGATTCAGTAAGGTTGCATGGATTATGGAATGTTTGGAGGGGATGGAGGAGGTGATTAGGGAGGAGTTGGCTTTGATTCTAGAAGCTTCTATGAGGCAGTGTAGGGTTTGTAGGGTTTATGGTTTGTGGAGTGACGTAGAGGTGGTGAATGGTCCTCTGTATCTGGTCTGTGAGAAGCAAAGTTGTAGCCTTTCCGAGAAGTTCAGTGAAATGAGGAATGGATTCCTCGGCTTGGAATTGGAAGATAAGTGTGTTGGGGTTTTCAGCTTCGCAATGGTTGGGAAGGGTGTCTGTGAGTCTGTTCTGGCTTTGCATTTGGAAGGTATGGTTGCAGGCTGTTTAGGACTTTCCTGCTTCTCTTTCGATGAGCTTGGTAGTGTTTGTGTTGATTTGGGAGAGGTGTTGGTGATGGGAAGGAAGGTTATGGATGCTGTTGATAAGAACAAAGAAGAGGCATTGTTTGAGGATTGCTTGAAAAAGGAGCTTTTCATAAGCCCTGAGGTTTTGCTCAAGTTATTGCAGAAGAAAGGGGCTTTTGATCCTGAGAATGGGAATTCAAGAAATCCACATCCAATTGGGTATGGCTCAGATGTGTGGTCGCTGGCTTGTGTACTTTTGCGGCTTCTTATTGGAGATGCACTCCCTCGATGTACCTTTGAAATGAATGAAGAGAATGGCTTGGACTTATCAGTTAGTTATGGCTGTTGGGTGGAGAAAGTCAGTTCATTTTTGGAAGACAAACTAGGCTCTGAATATATACCTTTGAGGCAGACTATTTGCAAATGTTTGGACATGGATCCGGGAAACCGCCCATCTGTGGTGGATGTAAGGAACTGCATTCAGGGTATATTAGTCAAACATCAACTTGATTTTTCGGGCAACTTGGAGGTCACAATAAATAGGAACAATGCAGATCACTGCTTGATTCTTGGAGACTTGTGTCAGTTGCTTCGTAAAAGATCTTATGAAGATTGTGGTGCTAGCCCATCTAAGGAAATGATCGAATTTAAAGATCTGCGAGGCCATCTTGATTGTATCACAGGATTGGTAGTTGGGGGGGGATATCTGCTTAGCTCCTCATTTGATAAAACTGTCAATGTGTGGTCCTTGCAGGACTTTTCTCATATACACACATTTAGAGGTCATGAGAACAAAGTCATGGCTCTAGCTTATGTAGATGATGAAGAACCGTTGTGCATAAGTGGTGACAGTGGAGGGGGTATATTTGTCTGGGGAATTACTGTTCCTCTCAGGCAAGATCCCTTGAGAAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCACTCCATGACTGTTTCCAGAAATCGTTGTCTCTACACTGGAAGTGGGGATAGAACAATAAAAGGTTGGTCTTTGAAGGATGGATCATTGATATGCACAATGAACGGCCATAGATCTGCCGTATCAACACTTGCAGTATGTGACGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATACGGTTGTGGAGTCTTAATGATCACAGCCCACTGACAGTACTGGGGGAAGGTGTGCCTGCAGAGATGAAGTCTATCCTGGCTATTACTGTTGATAGACACTTGCTCGTTGCAGCTTATGAGGATGGATGCATAAAGGTCTGGAGGAATGATGAGTTCATGGGTTCCAAATCACTGCATAATGGTGCCATTTTTGCTATGAGCATGCAAGGCAAAAGCCTTTACACAGGAGGCCGGGACAAAAATGTTAATATACAGGAATTATCAGGAGATGAGTTTGAACTAGATGTCAGAGCATTTGGATCCATTCCTTGCAGTTCTGTTGTGACAACTACTTTATGCTGTCAAGGAAAACTTTTTGTTGGATATGCTGATAAGTCTATCAAGGTTTATCAGAGAGGGTAA 2460 0.45 MELPECPVCLEPYDEHVAIPRVLSCGHSVCESCIVELPQRYPNTVRCPACMQLVKYSSQQGPSSLPKNIDLLRICLQHSPSSSSTSSDHARKKQNQRSAINGGDELSGFRTRVWSEEFYAKWKDWILLHDPVSVEFEPEPEPGGFGFVLRGRFGLGSSLKGRVSVCLRDSKDLIFVPFFHLPHKVNRCEFRFSKVAWIMECLEGMEEVIREELALILEASMRQCRVCRVYGLWSDVEVVNGPLYLVCEKQSCSLSEKFSEMRNGFLGLELEDKCVGVFSFAMVGKGVCESVLALHLEGMVAGCLGLSCFSFDELGSVCVDLGEVLVMGRKVMDAVDKNKEEALFEDCLKKELFISPEVLLKLLQKKGAFDPENGNSRNPHPIGYGSDVWSLACVLLRLLIGDALPRCTFEMNEENGLDLSVSYGCWVEKVSSFLEDKLGSEYIPLRQTICKCLDMDPGNRPSVVDVRNCIQGILVKHQLDFSGNLEVTINRNNADHCLILGDLCQLLRKRSYEDCGASPSKEMIEFKDLRGHLDCITGLVVGGGYLLSSSFDKTVNVWSLQDFSHIHTFRGHENKVMALAYVDDEEPLCISGDSGGGIFVWGITVPLRQDPLRKWYEQKDWRFSGIHSMTVSRNRCLYTGSGDRTIKGWSLKDGSLICTMNGHRSAVSTLAVCDEVLYSGSWDGTIRLWSLNDHSPLTVLGEGVPAEMKSILAITVDRHLLVAAYEDGCIKVWRNDEFMGSKSLHNGAIFAMSMQGKSLYTGGRDKNVNIQELSGDEFELDVRAFGSIPCSSVVTTTLCCQGKLFVGYADKSIKVYQRG* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0910 819 CDD RING-HC_TRIM32_C-VII 5 50 - -
Aev08g0910 819 Pfam WD domain, G-beta repeat 527 559 IPR001680 GO:0005515
Aev08g0910 819 Pfam WD domain, G-beta repeat 656 690 IPR001680 GO:0005515
Aev08g0910 819 Gene3D - 608 819 IPR015943 GO:0005515
Aev08g0910 819 SUPERFAMILY WD40 repeat-like 525 817 IPR036322 GO:0005515
Aev08g0910 819 Gene3D - 477 606 IPR015943 GO:0005515
Aev08g0910 819 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 816 - -
Aev08g0910 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 699 IPR001680 GO:0005515
Aev08g0910 819 SMART ring_2 6 50 IPR001841 -
Aev08g0910 819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 692 - -
Aev08g0910 819 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Aev08g0910 819 ProSiteProfiles Zinc finger RING-type profile. 6 50 IPR001841 -
Aev08g0910 819 SMART WD40_4 522 559 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 781 817 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 653 690 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 693 734 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 608 650 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 735 772 IPR001680 GO:0005515
Aev08g0910 819 SMART WD40_4 562 602 IPR001680 GO:0005515
Aev08g0910 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Aev08g0910 819 ProSiteProfiles Protein kinase domain profile. 134 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aev08g0910 819 Pfam RING-type zinc-finger 6 48 IPR027370 -
Aev08g0910 819 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Aev08g0910 819 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Aev08g0910 819 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Aev08g0910 819 SMART serkin_6 147 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aev08g0910 819 MobiDBLite consensus disorder prediction 80 103 - -
Aev08g0910 819 SUPERFAMILY RING/U-box 5 59 - -
Aev08g0910 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 568 IPR001680 GO:0005515
Aev08g0910 819 PANTHER - 2 816 IPR044715 -
Aev08g0910 819 SUPERFAMILY Protein kinase-like (PK-like) 211 481 IPR011009 -
Aev08g0910 819 Gene3D Transferase(Phosphotransferase) domain 1 207 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0910 Aev-Chr8 5382394 5385689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0910 528 819 Acyl Lipid Metabolism Gene Families AT3G18860 22.000 4.36e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0910 - K03070 gmx:100793437 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0910 08 5382394 5385689 Aev08g0910 08 5382394 5385689 ECH