Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0909 ATGGCCACCACCGTGCCCACCCTCTCACATTCTGCAGCACCACCACCTTCCTTCGCCGCTAAACCCCTTCTTCACACCCACCCCAATGCCGGGTTTTGCTTCATTCCACCCTTTTCCACCTTCCCTCGCCTGAGACGACGTCGTTCCACACGCGCACCCGTTGTCGCCGCAGTCGCCTCCACAAAGGGAAACTTCATGGGTCATGTTCGGAAGAGTCTCAACGATTTCACGAGCTTGAACTACTGGGTTGTGCGTGATTATTACCGTCTCGTTAACTCCGTCAACTCCTTCGAGCCGTTGATTCAAAAACTCTCCGACGAGCAGTTAACGGCGAAGACGGTGGAGTTTCGCAAGAGGCTCGGGCAAGGGGAGACCCTTGCTGATATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCAAGGAGGAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGGGCTGTGCTACATGATGGGTCCATTGCTGAAATGAAAACAGGGGAGGGGAAAACATTGGTTTCCACTTTAGCTGCGTATCTTAATGCCCTCTCTGGTGAGGGTGTCCATGTGGTGACAGTCAATGATTATTTGGCTCAGCGTGATGCTGAATGGATGGGCCGAGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGAACTCTGAGGAGCGGAGGTTCAACTATAGATGTGATATTACATATACCAATAACTCTGAGCTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGAGAAGATCTTGTGATGAGATGGTCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCCGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTAGCTGAACTGCTTGTGCAGGGCATTCATTACAAAGTGGAGCTTAAAGATAACTCAGTGGAGTTGACAGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGATCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAGTTTTATCGCCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGCAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAAGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACTTACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACAGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAAATGCCAGTCATTGAAGTGCCTACAAATCTTCCTAATATTCGCAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGCCCTGTTTTGGTTGGGACAACTAGTGTAGAGAATTCTGAACTTTTGGCTAGTCTGCTTAGGGAATGGAATATTCCCCACAATGTTCTGAATGCTCGACCGAAGTATGCTGCAAGGGAAGCTGAAACTGTTGCACAGGCAGGAAGGAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAACATACTTCCGATTTTAACACAGCAGGATCCAAATCTAGAACTTTCTAGTGAGGATATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCACTTGCCTTACTGGCTAGGACAGCCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAGAAGTTGGACATATCAAGAGACTAAATCTTTTATACTGAACGCTGTTGAATTGAGTATGTCACATAGTTCAGAGGAGCTGGAGAAGCTTGCCAATGAAGAATCTGATTTTTACCCTCTTGGTCCAATAGTAGCACTTGCCTATCTGTCAGTTTTCAAGGACTGTGAAGAACACTGCTTGCATGAAGGGTCTGAAGTAAAAATGCTTGGGGGCCTTCATGTAATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTTCGTGGCAGGGCAGGAAGGCAGGGGGATCCAGGATCAACACGTTTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACCGAATGGGCTGTGAGACTTATCTCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTGTTGGGGCTGCAAATCAACGCAGAAAAGTTCTTCTTCGGCATAAGAAAGAGCCTGGTTGAGTTTGATGAAGTATTGGAGGTGCAGCGGAAGCATGTTTATGATCTAAGGCAGTTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTGGTGGATGAGATTGTCTTCACTAATATTGATCCTTTGAAGCATCCACGTAACTGGCGTTTGAATAAGCTTCTGAAAGAGTTTTTAACCGTTGGTGGAAAGCTGTTGCATGAACCTTTTGGAGGGATTACTGACGATTCTTTGCTAAAATCACTTGGGCAACTGAATGATGTAAGTTCCATTGATATCGTCAACTTTTCTCTTCCAAATCTGCCAGCACCTCCAAATGCCTTCAGAGGAATTCGCAGGAAGAGCTCTTCATTAAGACGTTGGCTTGCTATTTGCTCTGATGATCTGATTCAGAATGGGAATTATAGGACAGCTTCCAATCTCCTTCGCAAGTATCTCGGAGATTTTCTAATAGCTTCATATGTAAATGTTGTTGAAGAATCTGGTTACGATGAGAAATATGCAAAGGAAATTGAGAGAGCTGTTCTTCTGAAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAACCGGCTCAGCTCCGCGTGCAACGAGAAGGTTAACTGTAGAAGCCCTGCTGCGGCATTGGACATCTCCTATGGAATCCCAAGAGCTAATTTTATCATAAATGTTGAGTTCTTCTTGCATAAAAGATATCATATAAAAAAAGCAGCTGATATGCTTCCCCTTCTGCGGAATGGCTCTAAGAGCTCGGGTTAG 3189 0.4381 MATTVPTLSHSAAPPPSFAAKPLLHTHPNAGFCFIPPFSTFPRLRRRRSTRAPVVAAVASTKGNFMGHVRKSLNDFTSLNYWVVRDYYRLVNSVNSFEPLIQKLSDEQLTAKTVEFRKRLGQGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALSGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRFNYRCDITYTNNSELGFDYLRDNLAGNREDLVMRWSKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLASLLREWNIPHNVLNARPKYAAREAETVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDNILPILTQQDPNLELSSEDISQKVLPKIKVGSSSLALLARTALMAKYVSKSEGRSWTYQETKSFILNAVELSMSHSSEELEKLANEESDFYPLGPIVALAYLSVFKDCEEHCLHEGSEVKMLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFTNIDPLKHPRNWRLNKLLKEFLTVGGKLLHEPFGGITDDSLLKSLGQLNDVSSIDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICSDDLIQNGNYRTASNLLRKYLGDFLIASYVNVVEESGYDEKYAKEIERAVLLKTLDCFWRDHLVNMNRLSSACNEKVNCRSPAAALDISYGIPRANFIINVEFFLHKRYHIKKAADMLPLLRNGSKSSG* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0909 1062 ProSitePatterns SecA family signature. 552 567 IPR020937 GO:0006605|GO:0006886|GO:0016020
Aev08g0909 1062 Pfam SecA preprotein cross-linking domain 304 408 IPR011130 GO:0016020|GO:0017038
Aev08g0909 1062 SUPERFAMILY Helical scaffold and wing domains of SecA 777 872 IPR036266 -
Aev08g0909 1062 CDD SF2_C_secA 470 741 IPR044722 -
Aev08g0909 1062 Gene3D Helical scaffold and wing domains of SecA 918 1013 - -
Aev08g0909 1062 SMART SecA_DEAD_2 73 452 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aev08g0909 1062 Hamap Protein translocase subunit SecA [secA]. 68 1049 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 SUPERFAMILY Pre-protein crosslinking domain of SecA 296 417 IPR036670 GO:0016020|GO:0017038
Aev08g0909 1062 SUPERFAMILY Helical scaffold and wing domains of SecA 947 1007 IPR036266 -
Aev08g0909 1062 CDD DEXDc_SecA 108 464 - -
Aev08g0909 1062 PRINTS SecA protein signature 389 411 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 463 476 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 167 181 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 129 153 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 183 193 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 426 443 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PRINTS SecA protein signature 236 256 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 72 1007 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 Coils Coil 647 667 - -
Aev08g0909 1062 Gene3D - 467 773 IPR027417 -
Aev08g0909 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 754 IPR027417 -
Aev08g0909 1062 TIGRFAM secA: preprotein translocase, SecA subunit 94 865 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aev08g0909 1062 Pfam SecA Wing and Scaffold domain 771 1005 IPR011116 GO:0016020|GO:0017038
Aev08g0909 1062 Gene3D - 88 465 IPR027417 -
Aev08g0909 1062 ProSiteProfiles SecA family profile. 69 773 IPR014018 -
Aev08g0909 1062 SMART SecA_PP_bind_2 297 408 IPR011130 GO:0016020|GO:0017038
Aev08g0909 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 318 IPR014001 -
Aev08g0909 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 465 IPR027417 -
Aev08g0909 1062 Pfam SecA DEAD-like domain 83 451 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aev08g0909 1062 Gene3D - 298 418 - -
Aev08g0909 1062 Gene3D Helical scaffold and wing domains of SecA 776 877 - -
Aev08g0909 1062 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 72 1007 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0909 Aev-Chr8 5372966 5381444 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0909 K03070 - gmx:100793437 1684.46