Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0878 ATGGATTTGCATGCCTTGGCGCGCACGCTTCACTCCGGCAACACCAACATCAACATCCACCAAGGCAGACAACTCCACCTCGTATTCCTCAAAACCGGCATCCTCACTTCCTCCCTCACCGTCGCCAACCGCCTCCTCCAATTCTATTCTAGGTTCGGCTCCGTCCAAGACGCACAACGCCTGTTCGACGAAATGCCCCAAACAAACGCTTTCTCGTGGACCACCCTCATGCAGGCCCACATCAACTCAGGCCAAAGGCACAAGTCCCTCCACGTTTTCCACGCCATGCCCGACAAGAACCCCTATACTTGGAACATGCTAGTTTCATCGTTCGCCAAGGCTGGGGACTTTGATGTGGCACACTCGTTGTTCAGTGCCATGCCTACGAGGAACGAGCTCGTTTGGAATTCCATGATTCGTGGTTATTCCCGAAATGGGTATCCGGAAAAGGCGTTGTTTTTGTTTAGGGACATGAATTTGGATCCTTTAGAGGCAGTGCATAGGGATGCTTTTGTGTTGGCTACTGTTCTTGGCACGTGTGCTGACCTCAAGGCTCTGAATTGTGGGAGGCAGGTGCATACCCGCGTTTTGGTTGATGGGGTGGAGCTTGATAAGGTGATGTGCAGCTCTCTGGTTAACTTTTATGGGAAGTGTGGTGATTTGGATAGTGCTGCTCGGGTTGTGGATTTTGTGAGGGGAGTGGATGAGTTCTCTTTGTCTGCTTTGGTATCTGGTTATGCAAATGCTGGCAGAATGAAAGAGGCAAGGAGAGTTTTTGATGGTGTGGTTGGTCCAAGTGGTGTGCTATGGAATTCAATTATTTCAGGTTATGTATCCAATGGTGAGGAATTGGAAGCAATGGCTCTCTTCATCAAAATGCGTAGGGATGAGGTTCGGGTTGACATTTCTGCAATTGCAAATATTTTGAGTGCTGGCAGTAGCTTACTCATGATTGAACTTGTTAGGCAAATACATGCTCACGCTTGTAAAGTTGGGGCGACTGATGACATTGTGGTTGCTAGTGCTTTGCTGGACGCTTATTCCAAGTGCCAAAGCCCTTATGATGCTTGTGAGTTTTTCAGTGAGCTCAAAGCTTATGATACGATTCTGCTCAATTCTATGATCACTATTTATTCCAATTGTGGAAGAATCGAAGATGCAAAGAGGATTTTTAATACCATGCCTAGTAAAACCTTGATTTCATGGAATTCAATCTTAGTTGGACTCACTCAGAATGCACGTCCTGATGAAGCATTGGATATTTTTTGTCAGATGAATAAGCTGGACCTGAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTTCTTGTGCTAGTAAATCATCCCTTAAACTTGGTGAGCAGGTATTTGGTAAAGCTATCACCATTGGGCTTGAATCCGACCAGATCATTTCTACCTCACTTGTTGATTTTTATTGTAAATGTGGATTTGTTGAGGTAGGGCGTAAAGTTTTTGATAACATGATCAAAACTGACGAAGTTTCATGGAATACAATGTTGATGGGATATGCCACAAATGGATACGGAATTGAGGCACTGACCCTCTTTAGTGAAATGTGTTATGCTGGTGTGAGGCCTTCTGCCATTACTTTCACTGGGGTTCTTTCAGCCTGTGATCATAGTGGTCTGGTTGAAGAAGGAAGAAATTCCTTCCATATTATGAAACATGACTATAATATAGATCCTTGGATTGAGCATTACTCCTGCATGGTTGATCTTTTTGCCCGTGCTGGCTGCTTTCGGGAAGCAATGGATCTTATTGAGGAGATGCCTTTTCCGGCCGACGCGAACATGTGGTTGTCAGTACTGAGAGGCTGCATTGTCCATGGAAATAACAGTCTTGGCAAGATGGCCGCGGAGCAAATTATTCAGCTTGATCCTAAAAATCGAAGTGCATACATACAATTATCTAACATACTTGCAACTTCTGAGGACTGGGAAGGATCTGCAAGAGTAAGAGAGTTAATGAGAGATAAGCTTGTTCAACAGGTTAGTGGCTGCAGCTGGGCAGATTGTTGA 2040 0.45 MDLHALARTLHSGNTNINIHQGRQLHLVFLKTGILTSSLTVANRLLQFYSRFGSVQDAQRLFDEMPQTNAFSWTTLMQAHINSGQRHKSLHVFHAMPDKNPYTWNMLVSSFAKAGDFDVAHSLFSAMPTRNELVWNSMIRGYSRNGYPEKALFLFRDMNLDPLEAVHRDAFVLATVLGTCADLKALNCGRQVHTRVLVDGVELDKVMCSSLVNFYGKCGDLDSAARVVDFVRGVDEFSLSALVSGYANAGRMKEARRVFDGVVGPSGVLWNSIISGYVSNGEELEAMALFIKMRRDEVRVDISAIANILSAGSSLLMIELVRQIHAHACKVGATDDIVVASALLDAYSKCQSPYDACEFFSELKAYDTILLNSMITIYSNCGRIEDAKRIFNTMPSKTLISWNSILVGLTQNARPDEALDIFCQMNKLDLKMDKFSFASVISSCASKSSLKLGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEVGRKVFDNMIKTDEVSWNTMLMGYATNGYGIEALTLFSEMCYAGVRPSAITFTGVLSACDHSGLVEEGRNSFHIMKHDYNIDPWIEHYSCMVDLFARAGCFREAMDLIEEMPFPADANMWLSVLRGCIVHGNNSLGKMAAEQIIQLDPKNRSAYIQLSNILATSEDWEGSARVRELMRDKLVQQVSGCSWADC* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0878 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 130 IPR002885 -
Aev08g0878 679 PANTHER OS07G0578800 PROTEIN-RELATED 167 679 IPR045215 GO:0003723|GO:0009451
Aev08g0878 679 PANTHER OS07G0578800 PROTEIN-RELATED 107 157 IPR045215 GO:0003723|GO:0009451
Aev08g0878 679 Pfam PPR repeat 102 130 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 238 260 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 71 99 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 268 296 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 134 158 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 372 397 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 573 597 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 400 428 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 473 497 IPR002885 -
Aev08g0878 679 Pfam PPR repeat 43 66 IPR002885 -
Aev08g0878 679 Gene3D Tetratricopeptide repeat domain 499 678 IPR011990 GO:0005515
Aev08g0878 679 Gene3D Tetratricopeptide repeat domain 165 316 IPR011990 GO:0005515
Aev08g0878 679 Gene3D Tetratricopeptide repeat domain 3 164 IPR011990 GO:0005515
Aev08g0878 679 PANTHER OS03G0849700 PROTEIN 5 99 - -
Aev08g0878 679 PANTHER OS03G0849700 PROTEIN 167 679 - -
Aev08g0878 679 PANTHER OS03G0849700 PROTEIN 107 157 - -
Aev08g0878 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Aev08g0878 679 Pfam PPR repeat family 499 545 IPR002885 -
Aev08g0878 679 Pfam E motif 616 676 IPR046848 -
Aev08g0878 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Aev08g0878 679 Gene3D Tetratricopeptide repeat domain 364 463 IPR011990 GO:0005515
Aev08g0878 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Aev08g0878 679 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Aev08g0878 679 SUPERFAMILY TPR-like 79 656 IPR011990 GO:0005515
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 102 130 IPR002885 -
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 134 158 IPR002885 -
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Aev08g0878 679 TIGRFAM PPR: pentatricopeptide repeat domain 574 597 IPR002885 -
Aev08g0878 679 PANTHER OS07G0578800 PROTEIN-RELATED 5 99 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0878 Aev-Chr8 5192363 5194402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0878 22 678 Glycoside Hydrolase AT3G49170 29.303 8.35e-102 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0878 - - gmx:100790756 1046.57