Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0877 ATGTCCCCGTTTTTGAAGCAAACACGAGTTCCTCACTCTTCACTCTCCTATTGCTCTCTTCTCTTAGACCACCCTTTATCTCAGAAATCTCTTAGCTTTCTCAAAACCGTCCATGCCCACTTCTTCAAATTGGGTTTCAACTCATATACCTGTCTGGGTAACCGCTGTCTCGATCTGTACTCCGAGTTTGGCCAAACCACTGATGCATTCAAGGTGTTTGATGATATTACTCACAAGAATTCAACTTCATGGAACCTTTGCTTGAAAGGGTTGCTCAAAAGTGGCCACCTTGGGAAGGCGTGCCACTTGTTTGATGGAATGCCTGTTAGGGATGTCGTTACTTGGAATTCAATGATTTCGGGTTATGCTCATTATGGGTTTTTTAGTCATGGCTTGGAGCTATTTGTTGATATGCAAGATGCTGGTGTGAGACCAAGTGAGTTCACTTTCTCAATTTTGATGTCGATTGTGTCGAGTTCTTGTCATGCTAAGCAGGTTCATGGTAGGATGATTATAAATGGGATGGACTTGTCCAATGTGGTGCTTGGGAATTCGTTGATAACTATGTATGGGAAGCTTGGTCTTGTTGATTATTGCTTTGGTGTGATTTTGACTATGAAGAAGTTTGATGTTATATCTTGGAACTCTTTGATGTGGGCCTGTCATAGAGCTGGACACCAAGAGTTGGCAATTGAGCAGTTTTATCAGATGAGAGCTATGGAGTTGATGCCTGACCAGTTTACGTGTTCGATATTGATGAGTGTCTGTTCTAACTTGAGAGATTTGGAAAAGGGTGAGCAAGTTCTTGCATTTTGTTTCAAGGCAGGATTTGTTGATAATAGCATTGTATCAAGTGCTGCTATTTCTCTCTTTTCAAAATGTGACAGATTGGAGGATTCTGTCCAGCTCTTCAAACAACAAGATCAATGGGATTCAGCTCTATGCAATTCCATGATTTCAAGCTATGCTAGACACAATTTAGCCGAAGATGCATTGCAACTTTTTGTGCTTACCTTGAGGAGGAATGTCAGGCCAACAGAATACATGGTCAGTTGTCTTCTTAGTTCTGTTTCCATTTTTTTACCAGTAGAAATAGGTAACCAAATCCATTCTATGATTCCTAAATTGGGTTTCGAGTCAGATGCAGTTGTTGCCAGTTCACTTGTCAATATGTATGCAAAATTTGGATTTATTAATGATGCCCTGAATATCTTCAATGACATGAAAATAAAAGATTTGGTGTCATGGAACACCATTATGATGGGATTGACTTATAATGGTAAAGTGTTTGCTGCTATGGACATCTTTAAAGAATTGATTAGAGAAGGTACACCTCCGGATCGAATAACATTTGCTGCAGTTCTACGAGCATGCAACTACGGGAGTTTGGTTGATGAAGCCATTGAAATATTTTCCTCAATGGAGAATGAATTTGGGATAAAACCAGGGGAACAACATTACGCTCATGTTGTGAAGTTGTTGAGTCAAGCCGGTAAACTCAAAGAAGCCATCCACATGGTAGAAACAATGCCATATAAGACTACCTCTGACATCTGGAGACCAATTCTTTTTGCATGTGCAATTCATGAGGATTTGCGAGTTATTGAAAGTGTTGCGAGGAAAATAATGGAGAGTGAACCACAGACATCACTACCTTACCTGGTGTTGGCTCAAGCATATCAGATGAGGGGCAGATGGGAGAGCATGGTTCGAGTGAGGAAGGCTGTGGAACAAAAGGGTGCTAAGGAGTTCATTGGATACAGTTGGGTTGGGATAAAAAATCATGTGTACTCTTTTGCATCTAATCAATTAGAGCATTATGGTGGCAAGGATCTTTATTTGGTGCTGAATTTACTGCTCTGGGAGATGGAGAATGAAAGATGTGCCTAA 1890 0.4058 MSPFLKQTRVPHSSLSYCSLLLDHPLSQKSLSFLKTVHAHFFKLGFNSYTCLGNRCLDLYSEFGQTTDAFKVFDDITHKNSTSWNLCLKGLLKSGHLGKACHLFDGMPVRDVVTWNSMISGYAHYGFFSHGLELFVDMQDAGVRPSEFTFSILMSIVSSSCHAKQVHGRMIINGMDLSNVVLGNSLITMYGKLGLVDYCFGVILTMKKFDVISWNSLMWACHRAGHQELAIEQFYQMRAMELMPDQFTCSILMSVCSNLRDLEKGEQVLAFCFKAGFVDNSIVSSAAISLFSKCDRLEDSVQLFKQQDQWDSALCNSMISSYARHNLAEDALQLFVLTLRRNVRPTEYMVSCLLSSVSIFLPVEIGNQIHSMIPKLGFESDAVVASSLVNMYAKFGFINDALNIFNDMKIKDLVSWNTIMMGLTYNGKVFAAMDIFKELIREGTPPDRITFAAVLRACNYGSLVDEAIEIFSSMENEFGIKPGEQHYAHVVKLLSQAGKLKEAIHMVETMPYKTTSDIWRPILFACAIHEDLRVIESVARKIMESEPQTSLPYLVLAQAYQMRGRWESMVRVRKAVEQKGAKEFIGYSWVGIKNHVYSFASNQLEHYGGKDLYLVLNLLLWEMENERCA* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0877 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Aev08g0877 629 PANTHER OS03G0435200 PROTEIN 1 628 - -
Aev08g0877 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Aev08g0877 629 Pfam PPR repeat 315 337 IPR002885 -
Aev08g0877 629 Pfam PPR repeat family 110 155 IPR002885 -
Aev08g0877 629 Pfam PPR repeat family 411 458 IPR002885 -
Aev08g0877 629 Gene3D Tetratricopeptide repeat domain 6 159 IPR011990 GO:0005515
Aev08g0877 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Aev08g0877 629 Gene3D Tetratricopeptide repeat domain 160 273 IPR011990 GO:0005515
Aev08g0877 629 Gene3D Tetratricopeptide repeat domain 274 359 IPR011990 GO:0005515
Aev08g0877 629 Gene3D Tetratricopeptide repeat domain 462 603 IPR011990 GO:0005515
Aev08g0877 629 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Aev08g0877 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Aev08g0877 629 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Aev08g0877 629 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Aev08g0877 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Aev08g0877 629 Gene3D Tetratricopeptide repeat domain 366 461 IPR011990 GO:0005515
Aev08g0877 629 Pfam Pentatricopeptide repeat domain 208 257 IPR002885 -
Aev08g0877 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 628 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0877 Aev-Chr8 5189360 5191249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0877 100 629 Glycoside Hydrolase AT3G49170 31.423 1.53e-82 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0877 - - gmx:100819993 1001.89