Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0863 ATGGATTCATCACTTGCTTCTCTTTTGGCCATACCAGCTCAGCTTTGGCGGAGAAGTGAAAGGCTGAGGGACAACCTTGGCTCTACAGACGGGACAAACAGGGTGCTTGGAGAGCCAGCTGTCGGCGCAGGCCACGTGGAACCCGTGGTTGCAACCGGGAACAAGCCGAGCCGGTTGGTTTTCCTCGATCTCGTCGAGGCACACGGCGCATTCGGTCCCCATGATAAGCTGTTTCCCGGTGGTTCTTGGAACCCTCTGCAGCTCCGAAGCGGAGAGCCCCTTGGGGGAAGCGGGCTTGTCCGAATGACATTCTCATACCCATCAAATTGGTATTCTTTAATATCGAACCACATTCGCCAGGGATCGCTGAAGCAAGCTCTTGTTGTGTATAAACAAACTCGCCGTGACGGAGTCTATGATTCCGGCGTGGCCTCGTTGTTACTCAAGGCTTCTGCCACGCTTTCCTTCCTTAACTATGGTAAGGCCTTGCACGCAGAGTCCGTCAAGTTCGGTTCGTACTGTGATGTTTTCATTGGAACTGCGTTGGTTGGGACTTACGCCAGATGTGGTGCACTTGGAGATTCCCGTAAGGTGTTCGATACAATGTCTCATAGAAATGTTGTCACGTGGAATGCCATGATCAGTGGGTACTTGAGGAGTGGGGACACGGATTCTGCTTCTCTTTTGTTCGAGGAGATGCCGGGGCAGACGCCGGCGTCTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGGGATACTGCTACTGCTAGGAGGTTGTTTGACAAGGCTCCGGGTGAGATGAAGGATGTGGTGACATGGACTGTTATGGTTGATGGATATGCTAGGAAAGGGGAAATGGAAGCTGCCAGGGAAGTCTTTGAAATTATGCCAGAAAGGAACTGCTTTGCGTGGTCGTCTATGGTCTGTGGGTACTGCAAGATTGGCAATGTCAAGGAGGCTGAGGCCCTTTTCGACCGGGTACCAGTTCCGGTTCGGAATCTGGAGATTTGGAACTCCATGATTGCTGGGTTTGTCCAGAATGGACTTGGAGAGAAAGCATTGCAGGCTTTTGAGAAAATGAGAGCTGAAGGGTTTGAACCAGATGAATACACTGTTGTTAGTGCTTTATCTGCTTGTGCTCAGCTTGGCCTCCTGGATGCTGGTAACGAAATCCATAACATGATAAAACTTAAGAGGGTAAGAGTTAATTCCTTTGTTGTTAGTGCATTGGTTGACATGTATGCAAAATGTGGCGATTTGGTCAGTGCAAGGTTGGTATTTGAAGAGGCCACTAAGAGGAACATCAACTGCTGGAATGCCATGATTTCAGGTTTTGCCAACAATGGGAATTGCCATGAGGTTCTTGAGTTCTTTAGCAGAATGGAGGATTCAAATATAAGGCCTGATTCAATCACCTTTCTTACTGTACTCTCGGCTTGTGCTCATGGGGGTTTGGTCAGTGAAGCTATGGATGCAGTATCTAAAATGGAGGCTTATGGAATTGAAATGGGCATCCAGCATTATGGATGCGTGGTTGACCTATTTGGAAGAGCAGGGAAATTGAAAGAGGCTTATGACTTGATAAAGGGAATGCCAATGAAACCTAATGAAACAGTTCTGGGGGCAATGCTTGGTGCATGCCGTATTCATTCAGATCCGAAAATGGCTGAACAAGTGATGGAGGTGGCAAGTGCTGCTGATCATTCTCGCAATGTGCTTCTGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGGATGAGGAGGGTCATGGTAGATGGAAGGACTCAAAAGATACCTGGGTCTAGTGCAGTCATCTTTTAG 1836 0.4826 MDSSLASLLAIPAQLWRRSERLRDNLGSTDGTNRVLGEPAVGAGHVEPVVATGNKPSRLVFLDLVEAHGAFGPHDKLFPGGSWNPLQLRSGEPLGGSGLVRMTFSYPSNWYSLISNHIRQGSLKQALVVYKQTRRDGVYDSGVASLLLKASATLSFLNYGKALHAESVKFGSYCDVFIGTALVGTYARCGALGDSRKVFDTMSHRNVVTWNAMISGYLRSGDTDSASLLFEEMPGQTPASWSQMIGGFARNGDTATARRLFDKAPGEMKDVVTWTVMVDGYARKGEMEAAREVFEIMPERNCFAWSSMVCGYCKIGNVKEAEALFDRVPVPVRNLEIWNSMIAGFVQNGLGEKALQAFEKMRAEGFEPDEYTVVSALSACAQLGLLDAGNEIHNMIKLKRVRVNSFVVSALVDMYAKCGDLVSARLVFEEATKRNINCWNAMISGFANNGNCHEVLEFFSRMEDSNIRPDSITFLTVLSACAHGGLVSEAMDAVSKMEAYGIEMGIQHYGCVVDLFGRAGKLKEAYDLIKGMPMKPNETVLGAMLGACRIHSDPKMAEQVMEVASAADHSRNVLLSNIYAASEKWEKAERMRRVMVDGRTQKIPGSSAVIF* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0863 611 Gene3D Tetratricopeptide repeat domain 237 301 IPR011990 GO:0005515
Aev08g0863 611 Gene3D Tetratricopeptide repeat domain 109 236 IPR011990 GO:0005515
Aev08g0863 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Aev08g0863 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Aev08g0863 611 Pfam PPR repeat 304 327 IPR002885 -
Aev08g0863 611 Pfam PPR repeat 509 533 IPR002885 -
Aev08g0863 611 Pfam PPR repeat 240 263 IPR002885 -
Aev08g0863 611 Pfam PPR repeat 272 302 IPR002885 -
Aev08g0863 611 PANTHER BNACNNG13520D PROTEIN 109 608 - -
Aev08g0863 611 Pfam PPR repeat family 335 381 IPR002885 -
Aev08g0863 611 Pfam PPR repeat family 435 482 IPR002885 -
Aev08g0863 611 Pfam PPR repeat family 205 233 IPR002885 -
Aev08g0863 611 Gene3D Tetratricopeptide repeat domain 409 609 IPR011990 GO:0005515
Aev08g0863 611 Gene3D Tetratricopeptide repeat domain 302 408 IPR011990 GO:0005515
Aev08g0863 611 PANTHER OS01G0913400 PROTEIN-RELATED 109 608 - -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 304 327 IPR002885 -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 272 302 IPR002885 -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 438 471 IPR002885 -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 208 233 IPR002885 -
Aev08g0863 611 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Aev08g0863 611 Pfam E motif 558 609 IPR046848 -
Aev08g0863 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Aev08g0863 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Aev08g0863 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Aev08g0863 611 SUPERFAMILY TPR-like 185 327 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0863 Aev-Chr8 5061089 5067224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0863 110 607 Glycoside Hydrolase AT3G49170 29.126 3.15e-63 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0863 - - gmx:100802813 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0863 08 5061089 5067224 Aev08g0863 08 5061089 5067224 ECH