Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0831 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGTTCACCACTAGGATTGAATACAAAGTTTTCTACTCATCGACCTGCGCTGAAGAGACCCTCAGTTGTAGCATTTAAAGGAGATAAGCACAATGATTCAGCATTGGTCGCAACTCAAGAGAAAGTTACTGTGCCTGTCGACACGGCCAAGACTAAAACTAAAAAGAGGTCAGGAAAAACTAGTAAATCGCCAAAGAGAGTGAGAGATGCCTTGGCGGAGGGAACTTCCCCGTCGTCCTTGGATGTGGACTACAATGAAGCTGCTGCAATACTTGAAAATATTTATAAACTCAGCCCTGCATCTGATACTCACGATGCAGAAAATATAGATAGTAAGGTAAAGAGATTCTTGCGGAGGGGGAAGAAGATTGGAGATGAAGGTAAAGAAGAGGAATTAAACAATGATAGGGTGGTCAGAAATGACAAAAAGAAGGCCAAACGGTTGAGTCTTGATAAGAGGATCGAATTAAAAAAGAACAAGGAAGGGGAGGTAGTCATCCCATCTCGAAAGAAAAGAAATGTTAGGAATAGCGCTGAGAAGATTGATGAACTTGTTAGGGAATATTCAGCATCAACGGACCTCGTCAGTTTGGACTGGAAAAAAATGAGAATACCCCCAGTTCTTCCCTCTTCTGAGCATGCTTGGCTGTTCAAGTTGATGCAACCTATGAAGGCGCTTCTTCAAGTGAAAGAAGATTTACAGAAGGAGCTAGACAGAGAACCTACGGAGGCTGAACTAGCTGATGCAACAAATATGAGCGCTTGTCAAGTAAAGAAAGCTATAGAGGTTGGTCGTGCTGCAAGAAACAAGCTCATAAAGCACAACCTCCGGCTGGTCTTGTTTGTGATCAACAAATATTTTCCAGATTTTTCCAGCAGTCGGAGATTTCAAGATCTTTGTCAGGCTGGAGTTAAGGGACTTATTACTGCTATTGATCGTTTTGAGCCAAACAGAAGATTTAGGCTATCTACATACGGTTTGTTTTGGATAAGACATTCTATCATTCGTTCCATGACCCTCTCGAGCTTCACACGCGTTCCGTTCGGACTTGAATCGGTTAGAGCAGAGATCCAAAGAGCTAAACTTGAGTTAACATTTGAGCTTCAGAGGCCACCAACCGATGAAGAAATTATGGATAGAATTCAAATCTCCCCTGAAAGATACCATGATGTAATTAAGGCATCAAAATCCATTCTTTCCCTTAACTCACGGCATTTAACCACCCAAGAGGAGCTTATTAATGGGATCACCGATGATGATGATGTTAATGGTGATAATAGAAGGCAACAAGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCACTGAAGCCAAAGGAGAGCTTGGTGATAAGGCAGAGATTTGGACTGGATGGAAAGGGTGACAGAACATTGGGAGAAATTGCTGGGAATTTGAATATTTCAAGGGAAATGGTAAGAAAGCATGAAGTGAAGGCCCTTATGAAACTCAAGCATCCAACTAGATTGGATTATCTTCGTCGTCATGTTGTATAA 1551 0.4204 MGVVTVSSSAARSPLGLNTKFSTHRPALKRPSVVAFKGDKHNDSALVATQEKVTVPVDTAKTKTKKRSGKTSKSPKRVRDALAEGTSPSSLDVDYNEAAAILENIYKLSPASDTHDAENIDSKVKRFLRRGKKIGDEGKEEELNNDRVVRNDKKKAKRLSLDKRIELKKNKEGEVVIPSRKKRNVRNSAEKIDELVREYSASTDLVSLDWKKMRIPPVLPSSEHAWLFKLMQPMKALLQVKEDLQKELDREPTEAELADATNMSACQVKKAIEVGRAARNKLIKHNLRLVLFVINKYFPDFSSSRRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYGLFWIRHSIIRSMTLSSFTRVPFGLESVRAEIQRAKLELTFELQRPPTDEEIMDRIQISPERYHDVIKASKSILSLNSRHLTTQEELINGITDDDDVNGDNRRQQALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRLDYLRRHVV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0831 516 MobiDBLite consensus disorder prediction 1 20 - -
Aev08g0831 516 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 357 420 IPR013324 -
Aev08g0831 516 PRINTS Major sigma-70 factor signature 455 467 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 PRINTS Major sigma-70 factor signature 491 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 PRINTS Major sigma-70 factor signature 476 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 PRINTS Major sigma-70 factor signature 333 341 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 PRINTS Major sigma-70 factor signature 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 421 507 IPR013324 -
Aev08g0831 516 Pfam Sigma-70 region 3 367 435 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 Pfam Sigma-70 region 3 237 277 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 Gene3D - 272 350 - -
Aev08g0831 516 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 200 349 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 MobiDBLite consensus disorder prediction 1 24 - -
Aev08g0831 516 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 516 - -
Aev08g0831 516 Pfam Sigma-70 region 2 282 348 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 Coils Coil 361 381 - -
Aev08g0831 516 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 278 504 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 Gene3D - 355 407 IPR036388 -
Aev08g0831 516 Gene3D - 229 271 IPR036388 -
Aev08g0831 516 MobiDBLite consensus disorder prediction 57 88 - -
Aev08g0831 516 Pfam Sigma-70, region 4 451 504 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aev08g0831 516 Gene3D - 438 516 IPR036388 -
Aev08g0831 516 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 516 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0831 K03093 - gmx:100776369 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0831 08 4859655 4862425 Aev08g0831 08 4859655 4862425 ECH