Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0579 ATGGAATCATCAGACAAGGCGGCAAACTTTGGAGGTGTCGTCCTAGGCAGCAGCTGTACAAGACCCTCATGGCCCTTTCTGGCTCTCCTCTTCACCTTCGTCACAGTCCTCTCCCTCCAGCTCTCCTCCACCTCCGTTTTCCCTTCTTGGCCCCTCATTCCGGCCTCCGCCCGCCTCAATAACCAACCTTCACCCTCGGATCCGGCCACATGCTCGTGTTTCTTCCGGGAAGTTCCGCGGAGGAAGGTGGTGATGTCGATCGAGGACTTCGGCGGCGTTGGCGACGGGAAGACCTCGAATACCGAATCTTTCCGGAGTGCGATTCGGTACATGCAGCGGTTTCGCGATCAAGGTGGGTCCCAGCTGAATATCCCCAAAGGAAAGTGGCTCACTGGTAGTTTCAATCTCACCACTGATTTCACTCTTTTCCTTCAACAAGGTGCTGTTATCTTAGCCTCTCAGGATCCAAAAGAGTGGCCTATAGTTGAACCATTGCCGTCCTATGGAAGAGGTAGAGAGAGGTTAGGGGGAAGGCATATTAGCCTTATACATGGAAATGGACTCAGAAATGTTGTCATCACAGGAGATAATGGGACAATTGATGGTCAAGGGAGGATGTGGTGGGAACTTTGGTGGAACAGATCATTGGAGCACACAAGAGGCCACCTTCTTGAACTTATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTCCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGGTCAAAGGGATGACAATATTGGCTCCTCTTAATGCCCCTAATACTGATGGCATAGACCCTGATTCAAGTACCAATGTATGCATTGAAGATAACTACATAGAAAGTGGAGATGATCTTGTAGCCATTAAGAGCGGATGGGATCAATATGGAATCACCATGGCCCATCCTAGCACAAATATCATAGTGAGGAGAGTCTCAGGCACTACTCCAACTTGTTCTGGAGTAGGAATAGGTAGTGAGATGTCTGGTGGAATCTCAAATATTACAATTGAGGATTTGCATGTGTGGGATTCTGCGGCCGGTGTTCGCATAAAATCCGATAAAGGAAGAGGTGGCTACATATCCAATGTTACTATAAGCAATATAAGAATGGAAAGAGTCAAGGTACCCATTAGGTTCAGTAGAGGTTCAGATGATCATCCTGATGATGGGTGGGATCCAAAAGCGGTTCCTAGATTCAAAGGCATTTCTATTAGTAATGTGGTTAGTCTGAATTCAACAAAGCCCCCTATTTTGGAAGGTGTAGAGGGATCATCATTTGAAGGCTTATGCTTCAAAAATATTACCCTTCATGGCATTGCCTCTTCTGCAACATGGCATTGTGAATATGTGTCTGGTTTTGCCACTGAGGTATTCCCTGTTCCATGTCCTGAGCTGCAAAACACTGGCAATAATTCATCTTGGTGTTCACCTTCATGA 1467 0.4656 MESSDKAANFGGVVLGSSCTRPSWPFLALLFTFVTVLSLQLSSTSVFPSWPLIPASARLNNQPSPSDPATCSCFFREVPRRKVVMSIEDFGGVGDGKTSNTESFRSAIRYMQRFRDQGGSQLNIPKGKWLTGSFNLTTDFTLFLQQGAVILASQDPKEWPIVEPLPSYGRGRERLGGRHISLIHGNGLRNVVITGDNGTIDGQGRMWWELWWNRSLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCSNVVVKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIEDLHVWDSAAGVRIKSDKGRGGYISNVTISNIRMERVKVPIRFSRGSDDHPDDGWDPKAVPRFKGISISNVVSLNSTKPPILEGVEGSSFEGLCFKNITLHGIASSATWHCEYVSGFATEVFPVPCPELQNTGNNSSWCSPS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0579 488 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Aev08g0579 488 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 481 - -
Aev08g0579 488 SUPERFAMILY Pectin lyase-like 79 476 IPR011050 -
Aev08g0579 488 Pfam Glycosyl hydrolases family 28 180 461 IPR000743 GO:0004650|GO:0005975
Aev08g0579 488 Gene3D - 76 466 IPR012334 -
Aev08g0579 488 PANTHER PECTIN LYASE-RELATED 16 481 - -
Aev08g0579 488 SMART pbh1 341 362 IPR006626 -
Aev08g0579 488 SMART pbh1 313 335 IPR006626 -
Aev08g0579 488 SMART pbh1 252 278 IPR006626 -
Aev08g0579 488 SMART pbh1 279 311 IPR006626 -
Aev08g0579 488 SMART pbh1 370 416 IPR006626 -
Aev08g0579 488 SMART pbh1 229 251 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0579 Aev-Chr8 3331430 3334258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0579 17 486 Glycoside Hydrolase AT4G33440 68.577 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0579 - - ahf:112715929 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0579 08 3331430 3334258 Aev08g0579 08 3331430 3334258 ECH