Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0547 ATGGGTCACGTTGGTTCCAGCAAGGGCGCAAAGTATTCCAACAACGTTAAGGCCGATTTGATGGACGTCGACGACGAAGACCTCAACGACCACTTCGACGACGATGACGACTTCCCATCCAACGGCGTCCTCAGGGGCTTAGGCGAAGAGCCTCTGAGGAACTTCTGCAAGAAAGCATCGATGCTGTTCTTCGAAGAGTACGGCCTCATCAGCCACCAGATTAACTCCTTCAACCAGTTCATCAGCACGGGTGTTCAGAGCGCTTTCGATTCCTTCGGCGATCTCAACGTTGAGCCGGGTTACGATCCTTCCAAGAAGGGTGAGGGGGATTATTACCGTTACGCCACCGTGAAGTTCGGGAAGGTGACGCTGGAACAGCCTACGTTCTGGGGCGGCGGCGACGGGAACTCAAGGGAGTTCAGGATGCTTCCCAGGCACGCGAGGCTTCAGAGGATGACTTACTCTTCCAAAATGAAAGTCGACGTTCAAATTCAGGTTTACATCCCTAAGATGATGAGAAGTGACAAATTTAAGACTGGGAAAGAACAGTACCTTGATAGAGAGATTCTGAAGGAAGAAAGCAAAGAAACTATGGTTGGGAGATTGCCTATCATGGTCAAGTCTGATCTTTGCTGGATGAAAGGTGTGGAAAATGTTGATTGTGATTTTGATCATGGAGGCTACTTTCTGATCAAGGGTGCAGAGAAGACTTTTATTGCTCAGGAGCATATCTATTTAAGGAGGCTCTGGATTATAGATAATCCTTGGTGGTCAATTGGCTACAAGTCACAGGTGAAGAGACACAGGCTAATTGTTAAACTGGTTGGAAATTCCAGAATTGAAGAAATTAACAGTGGAGAGAAGGTCCTCACCGTATACTTCTTGGGTGTTGAGATTCCCATATGGTTGTTATTTTTTGCTTTTGGTGTCTCATCAGACCGAGAGGTTGTTGATCTCATTGATTATGCTGATGGTGACGCACGAGTTGAAAATATTCTTTTTGCATCCATTCATGATGCTGATGACAAATATGGTGGATTCCGCAAAGGGAAGAATGCACTTAGTTTCATTGAGAAATCTATAAAAGGTGTCCAATTTCCACCTCAAGAACCTATTGAAGAATGCCTTAATTTGTATATCTTTCCCAACATTAAAGGATTGAAGAGAAAGGCACGCTTCCTTGCACACATGGTGAAGGGCCTCTTAATGGCTTATACTGGTCGCAGAAAATGTGATAACAGGGATGATTTTCGGAATAAGAGGCTTGAGTTGTCCGCGGAGCTTTTGGAGCGCGAGCTGAAAGTTCACATTGCACATGCTCGGAAGCGATTGTCAAAGGCATTGCAGAGAGACCTTTATGTTGATCGTGATGTACGTCCAATTGATTACTATCTAGATGCTTCCATAATTACAAATGGTCTCCAAAGAGCATTCTCTACTGGAGCATGGTGTCATCCTTACAAAAGGTTAGAAAGGATTTCTGGCGTTGTTGCAAATGTTGGGCGAACTAATCCATTACAGACCATGGCTGAGTTGAGAAGAACTAGGCAACAGGTCCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACCCCAGATGGTGAAAACTGTGGACTAGTGAAAAACTTGGCTGTCACAGGACTAGTAAGTACCAACATATCTGAATCCATACTGCCTCAGTTGTTTGAATGTGGAATGGAAGAGCTACCGGATGATACTTATACTGATCTGGGTGAAAAGGACAAAGTCTTCGTAAATGGTGATTGGGTTGGTGTTTGCACAAATTCCATTTCTTTTGTGCAAGAACTAAGGAGTAAACGACGTAGAAATGAATTGCCCCATCAGGTGGAAATCAAACGAGACAAAACTCTTAAAGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTGCGCCCTCTTCTGGTAGTTGATAATCTTTATAAGATTAAAGAATCTAAAGGGTCTAAATGGGAGAATTACTCTTTCCGATCTCTTTTGGAGAATGGAGTGATCGAGCTTGTTGGGCCTGAAGAAGAGGAAGACTGCTGTACTGCATGGGGTGTTCGGTATTTATTTGGTAAAAAGGTCTATACCCACTGTGAACTTGATATGTCATTCCTGTTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGATCATGCGAGGAGGGTACTCTACCAGTCTCAGAAGCACTCTTCACAGGCCATTGGCTTTGGTACAACGAATCCAAACATTAGAGTTGATACTTTGTCTCACCACTTATACTATCCTCAAAAGCCCCTCTTCCGTACCATGACTTCTGATTGTCTTGGAAAAAAAGGACACCCGCTCAGTCATAATAGTATAAATCCAAGGGCTGAATTTTATAATGGGCATAATGCAATTGTGGCTGTTAATGTACATATGGGATACAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGCGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAAGCTGAAATTGATAATAAAGATTCTACGGATAAGAAGCGGAAACCTGAAGACATTATAAATTTTGGGAAGGTACAAAGTAAAATTGGTCGAGTTGATAGCCTCGATGATGATGGATTTCCTTATGTCAGTGCTAATTTGCAAAGTGGTGATATTGTTATCGGGCGTTGTGCTGAGTCAGGGACAGACCATAGTATAAAGTTAAAGCACACAGAAAGGGGTTATGTTCAGAAGGTTGTGCTGTCCTCAAATGATGAGGGGAAGAATTTTGCTGTGGTTTCACTGAGACAGGTTCGGACTCCTGTTCTTGGAGACAAGTTTTCAAGCATGCATGGACAAAAGGGTGTCTTGGGATTTCTGGAGTCTCAGGAAAATTTCCCTTTCACAAGACAAGGTATTGTTCCGGATATTGTCATTAACCCCCATGCATTTCCCTCACGTCAAACACCTGGGCAGCTCCTTGAGGCCGCTTTGGGGAAGGGGATTGCTTGTGGTGGTACATTGATGCATGCCACTCCGTTCTCCACTCCCTCTGTTGATGACATTACGGACCAGCTTCACAGATCTGGGTTTTCAAAATGTGGATATGAGAGAGTATATAATGGGAGAACTGGCGAGATGGTTCGGTCACTCATATTTATGGGCCCTACATTCTACCAGCGGCTACACCACATGTCAGAGGACAAGGTAAAATTCCGGAACACCGGTCCTGTTCACCCCCTAACTCGGCAGCCTGTAGCAGACAGGAAGCGATTTGGAGGTGTCAAGTTCGGTGAAATGGAGCGGGACTGCCTCATAGCACATGGTGCATCAGCCAACCTGCATGAACGCCTCTTTACACTCAGTGACTGCTCTCAGATACATATCTGTGGCAAATGCAAAAATGTTGCAAACGTGATCTTACGCTCAGTGTCTGGTGGCCGGAAAATAAGAGGTCCATACTGCCGCATCTGCGAATCTGTTGATGACATTGTAGTGGCCAATGTCCCATATGGAGCCAAATTATTGTGCCAAGAGCTCTTCAGCATGGGCATTAGTCTCAAATTTGAAACCCAGCTCTGCTAG 3600 0.4461 MGHVGSSKGAKYSNNVKADLMDVDDEDLNDHFDDDDDFPSNGVLRGLGEEPLRNFCKKASMLFFEEYGLISHQINSFNQFISTGVQSAFDSFGDLNVEPGYDPSKKGEGDYYRYATVKFGKVTLEQPTFWGGGDGNSREFRMLPRHARLQRMTYSSKMKVDVQIQVYIPKMMRSDKFKTGKEQYLDREILKEESKETMVGRLPIMVKSDLCWMKGVENVDCDFDHGGYFLIKGAEKTFIAQEHIYLRRLWIIDNPWWSIGYKSQVKRHRLIVKLVGNSRIEEINSGEKVLTVYFLGVEIPIWLLFFAFGVSSDREVVDLIDYADGDARVENILFASIHDADDKYGGFRKGKNALSFIEKSIKGVQFPPQEPIEECLNLYIFPNIKGLKRKARFLAHMVKGLLMAYTGRRKCDNRDDFRNKRLELSAELLERELKVHIAHARKRLSKALQRDLYVDRDVRPIDYYLDASIITNGLQRAFSTGAWCHPYKRLERISGVVANVGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNISESILPQLFECGMEELPDDTYTDLGEKDKVFVNGDWVGVCTNSISFVQELRSKRRRNELPHQVEIKRDKTLKEVRIYSDAGRILRPLLVVDNLYKIKESKGSKWENYSFRSLLENGVIELVGPEEEEDCCTAWGVRYLFGKKVYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFGTTNPNIRVDTLSHHLYYPQKPLFRTMTSDCLGKKGHPLSHNSINPRAEFYNGHNAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIDNKDSTDKKRKPEDIINFGKVQSKIGRVDSLDDDGFPYVSANLQSGDIVIGRCAESGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRTPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGTLMHATPFSTPSVDDITDQLHRSGFSKCGYERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLIAHGASANLHERLFTLSDCSQIHICGKCKNVANVILRSVSGGRKIRGPYCRICESVDDIVVANVPYGAKLLCQELFSMGISLKFETQLC* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0547 1199 Pfam RNA polymerase Rpb2, domain 7 1098 1196 IPR007641 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Pfam RNA polymerase Rpb2, domain 3 502 559 IPR007645 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 ProSitePatterns RNA polymerases beta chain signature. 949 961 IPR007121 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Gene3D RNA polymerase Rpb2, domain 2 257 410 IPR037034 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Gene3D - 726 1082 IPR037033 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Pfam RNA polymerase Rpb2, domain 2 290 423 IPR007642 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Pfam RNA polymerase Rpb2, domain 6 725 1096 IPR007120 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 Pfam RNA polymerase Rpb2, domain 4 596 657 IPR007646 GO:0003677|GO:0003899|GO:0006351
Aev08g0547 1199 CDD RNA_pol_B_RPB2 69 1195 IPR015712 GO:0003899|GO:0006351|GO:0032549
Aev08g0547 1199 Gene3D - 756 945 IPR014724 GO:0003899
Aev08g0547 1199 Gene3D RNA polymerase alpha subunit dimerisation domain 1083 1197 - -
Aev08g0547 1199 Gene3D - 62 244 - -
Aev08g0547 1199 Gene3D - 411 639 - -
Aev08g0547 1199 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 55 1196 - -
Aev08g0547 1199 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 39 1196 - -
Aev08g0547 1199 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 39 1196 IPR015712 GO:0003899|GO:0006351|GO:0032549
Aev08g0547 1199 Pfam RNA polymerase beta subunit 68 460 IPR007644 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0547 Aev-Chr8 3085785 3091653 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0547 - K16252 gmx:100815934 1941.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0547 08 3085785 3091653 Aev08g0547 08 3085785 3091653 ECH