Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0479 ATGGCGGATCCCTATTACCCATACGTTCCTTCCTCCCTCCCACTCGCTGACGGAGTGTCTGGTAGCATTCCGAGAACTAGTTTTGCTGGTTACATCCCAGCAGAGGTACCTTCACTTGCTTCACCTCTTGTCTCAAACTCTACTGGGTTGCTCGGTGTTGGACCAGATTACCTCCACAAAGATGTAAGTTTGTTTCGGACTGGCGTGTATGGCGTCGATGATGCTTTGGCTGGCTCCAGGCTTCATTCTGAACCTTCTGTTCTTCCAACGGGGTCTAGCATAAAGGGTTATTCATCTCTTGAAGATCCTGATCTTGGTAAAAAGCGAGATACTCCTCTGGCGATTAATCAGGGTGTTCATGATATAAGCGTTGAAAGGGCAGGCACTAAAAGCGATTATGATGGTCTGGCAAATTCAGCATTGGAATCGAATGTTCTGTTTGTGGGTGGGCTTCCGAATGACTGCACTAGAAGGGAAGTTGGCCATCTTTTCCGTCCCTTTATTGGCTACAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGAAGTGGAGACAAGGCTGTGACATTGTGTTTTGTGGAATTTGTTGATGCTAAATGTGCTCTCACTGCCATGGAAGCTCTGCAAGGCTACAAGTTTGATGATAAAAAAGCAGATTCACCGGTCTTAAAAATCCAATTTGCACACTTTCCTTTCCATCTGCCATCGGATCATGGTCAGAAGAAAGCAGGGAGTTGTGATAAGAATCAGGAGTGGCTTCAAAATGTACTCTACCATTTCTTTGTGCATGATGTCATGTTTATAAACCATGATATGCTATATGATTAA 828 0.4481 MADPYYPYVPSSLPLADGVSGSIPRTSFAGYIPAEVPSLASPLVSNSTGLLGVGPDYLHKDVSLFRTGVYGVDDALAGSRLHSEPSVLPTGSSIKGYSSLEDPDLGKKRDTPLAINQGVHDISVERAGTKSDYDGLANSALESNVLFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAVTLCFVEFVDAKCALTAMEALQGYKFDDKKADSPVLKIQFAHFPFHLPSDHGQKKAGSCDKNQEWLQNVLYHFFVHDVMFINHDMLYD* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0479 275 CDD RRM_RBPMS_like 144 226 - -
Aev08g0479 275 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 18 236 - -
Aev08g0479 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 217 IPR000504 GO:0003723
Aev08g0479 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 230 IPR000504 GO:0003723
Aev08g0479 275 PANTHER PROTEIN COUCH POTATO 18 236 - -
Aev08g0479 275 SUPERFAMILY RNA-binding domain, RBD 97 217 IPR035979 GO:0003676
Aev08g0479 275 Gene3D - 140 230 IPR012677 -
Aev08g0479 275 SMART rrm1_1 145 219 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0479 Aev-Chr8 2704819 2707325 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0479 - - ccaj:109789360 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0479 08 2704819 2707325 Aev08g0479 08 2704819 2707325 ECH