Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0406 ATGCATAGGTGGAAGCAGATCAGAGACAGGGAAGCTGGAAACTTGCGCCCACGTAGTTTCTCCAATCGGATCAAGTCAGAGAATCTCTCCAACCTCCAATTGTCCAATCACAAAGACTTCCTCTCTCCTCACAAAGGCGCCATCAACTCCCTTCAGCTTGATTTGACAGAGCGAAGATATCTGCTTTCTGCTGCCTCCGATGCCTCCGTTGCTGTTTACGACGTCCAGCGCCCCACCCATTACGAAGCCGCCGGTTTCATTTCCAAGCACAGTTCCCTGTTCCTCGTCGACAAGCAGCACCAGCTCGGCCACAAGTATGCCGTTTCCACTGCTGTCTGGTATCCCATTGACACTGGCTTGTTCATCACTGGCTCCTTTGATCATCACATCAATGTTTGGGATACCAACACCACCCAGGTGGTGGTGAATTTCAAGATGCCTGGGAAGGTGTATAGGACTGCCATGTCCACTCTGGCAACATCTCACATGCTTGTGGCGGCTGGAACTGAGGATGTCCAAGTTCGCCTCTGTGATATCGCTTCCGGGGCATTTGCTCACACCTTGTCCGGCCACCGCGATGGAGTAATGACTGTTGAGTGGTCTACTTCAAGTGAATGGGTCTTGATGACTGGGGGATGTGATGGTGCAATACGTTTTTGGGACATCAGACGTGCCGGATGTTTCCAAGTTTTAGATCAGTCTCTGACTCAGCTTGGAAGACGCCCATCTGTACCTAAACGCTCCATGATAAATAAGGATTCAACTCCTAACTCTTCCTTGGTTGGTCAAAATCCAAGTACAAAGCTGCGTGTTTCACAAAAAAAACTTGCCAATGGGAATGGCAGCAGGCAACTGCCATTTGGTAGAGTTCCACCCAAGGCACCAATGAAGCAGAGATTACATCCAGGGATGCTGTCTACTCAGGATCGTGCAACAGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGAGGATGGCATGTATCTGCTAAGTGCAGGGTCTGATTCGAGATTGAGATTGTGGGATATTGAATCTGGCTGTGACACATTAGTGAACTTTGAAACAGTCCGTCTTCAAACAAGCAAACCTATTCAGTTAGCCACCTCTGAAGACTCGACCCGTGTTTTTGTTCCATGCATGAGAGCTGTGAAAGCATTTGACATGTGGTCTGGGAGCACTGCCGCAACTTTTCGTGGCCACTATGAATCTGTGAACGCTTGCTGGTTTAATCAACAAGATCAGGAATTATACACCGGTGGGAATGACAGACAAATTCTTGTCTGGTCACCTGCTAGATTAATTTCTGATGAAATGGAGGAAGGACTTGCTGAGGATCAAGATAACTGGAGTAGCTGA 1359 0.482 MHRWKQIRDREAGNLRPRSFSNRIKSENLSNLQLSNHKDFLSPHKGAINSLQLDLTERRYLLSAASDASVAVYDVQRPTHYEAAGFISKHSSLFLVDKQHQLGHKYAVSTAVWYPIDTGLFITGSFDHHINVWDTNTTQVVVNFKMPGKVYRTAMSTLATSHMLVAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSTSSEWVLMTGGCDGAIRFWDIRRAGCFQVLDQSLTQLGRRPSVPKRSMINKDSTPNSSLVGQNPSTKLRVSQKKLANGNGSRQLPFGRVPPKAPMKQRLHPGMLSTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCDTLVNFETVRLQTSKPIQLATSEDSTRVFVPCMRAVKAFDMWSGSTAATFRGHYESVNACWFNQQDQELYTGGNDRQILVWSPARLISDEMEEGLAEDQDNWSS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 230 IPR001680 GO:0005515
Aev08g0406 452 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 452 IPR042238 GO:0006283
Aev08g0406 452 SMART WD40_4 95 134 IPR001680 GO:0005515
Aev08g0406 452 SMART WD40_4 181 221 IPR001680 GO:0005515
Aev08g0406 452 SMART WD40_4 301 343 IPR001680 GO:0005515
Aev08g0406 452 SMART WD40_4 391 430 IPR001680 GO:0005515
Aev08g0406 452 SMART WD40_4 34 74 IPR001680 GO:0005515
Aev08g0406 452 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 347 - -
Aev08g0406 452 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Aev08g0406 452 MobiDBLite consensus disorder prediction 242 267 - -
Aev08g0406 452 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Aev08g0406 452 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Aev08g0406 452 Pfam WD domain, G-beta repeat 99 134 IPR001680 GO:0005515
Aev08g0406 452 Pfam WD domain, G-beta repeat 396 430 IPR001680 GO:0005515
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 430 - -
Aev08g0406 452 MobiDBLite consensus disorder prediction 248 267 - -
Aev08g0406 452 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Aev08g0406 452 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Aev08g0406 452 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Aev08g0406 452 Gene3D - 293 433 IPR015943 GO:0005515
Aev08g0406 452 Gene3D - 4 264 IPR015943 GO:0005515
Aev08g0406 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Aev08g0406 452 SUPERFAMILY WD40 repeat-like 40 431 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0406 99 229 Miscellaneous Gene Families AT5G08390 26.718 3.47e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0406 K10570 - gmx:100815581 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0406 08 2250379 2253223 Aev08g0406 08 2250379 2253223 ECH