Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0381 ATGATCTCAATCTCTTCCACTGAGTTGAACTACTTGGTCTTCCGTTATCTTCACGAATCAGGTTTTACTCATTCAGCATTTGCATTTGGGTATGAAGCAGGAATCGATAAAACCATAATTGATGTTAACATGGTCCCACCTGGTGCTCTTGTTACTTTCATACAAAAAGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTAGCGATGCAGACATGGATGAGGATTTCTCGTTTCTTCAGCCGCTTGATCTCATCACAAAGGACCCCTATGAACTACACAATATAGTAAAGGCCAAGAAGGAAAACCTACGACAACATAAGTTTGAATCTAACAAAATAGCAAATGACATGAATCAGGAAAATGTACGTGAGCATGTTCAGGAAGTAGAGAAAGAGAAGAAAGAAAGGGAAAATGAACAAGGGGTGGAGAAAATGAAGCTAGATAAAGACAGAGAACAAGAAAAGGGTGAACATAAAGAAATACAACACCCTGATCAAAACCATTCAGCGAATCAAGAAGCTAATATAAGAGTTGAAAATCTAGAAAATAAACCAAGTGGAGGGCCTGAGCCAATGGAGATCTCCCAAAGCTCCTTGCCATTGCCTAATGATATTCCATCTAGTGATGTAAAAGTTTTGGAAGGTCATACATCCGAGGTTTTTGCTTGTGCATGGAATCCATCTGGCCCTCTTCTTGCATCTGGTTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGAAGGACCTTCTAACTCCAGTGTGCATAATGAGCCTGTAAATGTTGTGGTGCTGAGGCATTTTAAGGGAAGAACGAATGAAAAAAGCAAAGATGTGACAACACTTGACTGGAATGGCGATGGAACATTATTGGCAACTGGTTCCTATGATGGCCAAGCTAGAATATGGACTAGAGATGGAGAGTTGAAGAGCACACTCAACAAGCACAAAGGGCCAATTTTTTCCCTAAAGTGGAACAAGAAGGGAGATTATCTTCTTAGTGGAAGTGTAGATAAAACTGCTATTGTATGGGACATTAAGACTGGCGAATGGAAACAACAATTCGAATTTCACTCTGCCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCTTTTGCAACGTGCTCCACTGATAATATGATATTTGTATGCAAAGTTGGAGAGAACAGACCAATTAAAACTTTCGCAGGGCATCAGGGTGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTGCTGGCTTCCTGCTCTGATGATCACACTGCAAAAATATGGAGTCTGAAACAGGACAAGTATTTGCATGATTTAAAGGAACATGTCAAGGAGATATATACTATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAACCAACAGTTGGTACTAGCAAGTGCCTCCTTCGACTCTACTGTAAAGCTCTGGGATGTAGAACAAGGGAAAGCACTCTACAGCTTAAATGGCCACAGGGATCCTGTATACTCGATTGCGTTCAGCCCTAATGGCGAGTATCTTGCTAGTGGCTCCATGGATAAATGCATGCATATATGGTCCGTGAAGGAAGGGAAAGTTGTGAAAACGTATGCTGGAAATGGTGGGATCTTTGAAATTAGTTGGAACAAAGACGGTGACAAAGTTGCTGCTTGTTTCTCAAACAATATAGTCTGTGTTTTGGATTTCCGAATGTAG 1704 0.412 MISISSTELNYLVFRYLHESGFTHSAFAFGYEAGIDKTIIDVNMVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKDPYELHNIVKAKKENLRQHKFESNKIANDMNQENVREHVQEVEKEKKERENEQGVEKMKLDKDREQEKGEHKEIQHPDQNHSANQEANIRVENLENKPSGGPEPMEISQSSLPLPNDIPSSDVKVLEGHTSEVFACAWNPSGPLLASGSGDSTARIWKIAEGPSNSSVHNEPVNVVVLRHFKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWTRDGELKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIFVCKVGENRPIKTFAGHQGEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDKYLHDLKEHVKEIYTIRWSPTGPGTNSPNQQLVLASASFDSTVKLWDVEQGKALYSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKVVKTYAGNGGIFEISWNKDGDKVAACFSNNIVCVLDFRM* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 432 - -
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 305 - -
Aev08g0381 567 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Aev08g0381 567 Gene3D - 204 567 IPR015943 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Aev08g0381 567 Coils Coil 117 141 - -
Aev08g0381 567 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Aev08g0381 567 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Aev08g0381 567 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Aev08g0381 567 MobiDBLite consensus disorder prediction 127 205 - -
Aev08g0381 567 SMART WD40_4 484 523 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 308 347 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 391 430 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 350 388 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 433 481 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 208 247 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 526 564 IPR001680 GO:0005515
Aev08g0381 567 SMART WD40_4 263 306 IPR001680 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 305 IPR001680 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 528 - -
Aev08g0381 567 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Aev08g0381 567 SMART Lish 5 37 IPR006594 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 352 - -
Aev08g0381 567 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Aev08g0381 567 Gene3D - 2 90 - -
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Aev08g0381 567 Pfam LisH 8 33 IPR006594 GO:0005515
Aev08g0381 567 MobiDBLite consensus disorder prediction 127 168 - -
Aev08g0381 567 PANTHER WD40 REPEAT PROTEIN 4 567 IPR045183 GO:0003714|GO:0016575
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 490 IPR001680 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 532 IPR001680 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Aev08g0381 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Aev08g0381 567 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 567 - -
Aev08g0381 567 CDD WD40 212 523 - -
Aev08g0381 567 SUPERFAMILY WD40 repeat-like 207 565 IPR036322 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 486 523 IPR001680 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 267 305 IPR001680 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 436 481 IPR001680 GO:0005515
Aev08g0381 567 Pfam WD domain, G-beta repeat 393 430 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0381 Aev-Chr8 2107939 2112237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0381 395 565 Miscellaneous Gene Families AT5G08390 29.480 3.70e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0381 K04508 - gmx:100783690 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0381 08 2107939 2112237 Aev08g0381 08 2107939 2112237 ECH