Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0221 ATGAGCAAAAGAACAGCACCTGATCCGGTGGCAGTGCTGCGGGGTCATCGAGCTTCCGTCATGGATATTTCCTTTCATCCTTCTAACCCAATTTTATTCTCCGGTTCTGCTGACGGTGAACTCCGCATTTGGAATACTCTTCAGCATCGAACTCTATCATCTGCATGGTTACATAGTGCCGCTCATGGGATTGTTGCTGTTGCCTGTAGTGCTTCCCTCGGCACCGATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTCAAACTTTGGGATTTCGGTGGTGCTGCTTTGTCCAGGACTCCTTTGCTTACCATCAAGACCAACACTTACCACTTCTGCAAGCTTTCAACAGTGAAGACTCCTTCTTCTCACTCTGAACATCGCCACAGAACAGAGCTTACGGGAGCATCTGACAGAGAAATTCCAGAGGAGGATAGGAGAGAAGAGGCTTGTGCCAGTAAAAGTTGTTCTGAAAGCCTTGAAGAAAGTATGTATCGTGAAGGGCTGCAGTATGTGGCTTTGTCAGGGGAGAACTCTTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAGATTTGCGCGACTTCCTTCAAACATCCTTAGTAACTCGACAAATGATTGCAACAAAGGCAGAGGGATGTGCATGGCTCTTCAATTGTTTTTACCATCTGAATCACAGGGATTTCTTAATGTCTTGGCTGGTTATGAGGATGGTTCCATGCTTTGGTGGGATGTACGCAATCCTGGAGTTCCAGTAACCTCTGTAAAGTTCCATTCTGAACCAGTTTTGAGCATCTGTGTTGATGGGTCTTGCAAAGGGGGTATCTCCGGAGCTGCAGATGACAAGATTGTAATGTACAGCTTGGAGCAATCTTCGGGTACATGTGTAGTCAAGAAAGAAATCAGCTTGGAGCGACCTGGCATCTCAGGCACATCAATTCGGCCTGATGAAAAAATTGCAGCAACTGCTGGCTGGGACCACAGAGTAAGGATATATAATTACTGCAAAGGAAATGCTTTGGCAATATTGAAGTATCACCATGCCACGTGCAACGCTGTAACGTATTCATCTGATTGTAAGCTTATGGCCTCTGCATCAGAAGACACAACAGTAGGGCTATGGGAATTGGGGAGGTCAACAGTCAGGTCATATTTCTCCAGGAGGTCGAGATGGGAGGATGCTACGGCTAGGGCAGAAATTGGTAGCGGTGTTAGAGGGCGAAACACTCTGCCTAGAGGGAGCATAAGGGGGGGTGTGAGTAGAGGGTTCACAAATAGTGAGAGAAACGTGAGGGATGATCGCAATCATAGCGGTTTGCGTAGGGGAAAAGTCTCGGTATTTATTGATAATATCCCATGGACAATAGGGAGAGGATGGTTATGGAAGATGTTTAAGAAGTTTGGATGGATTACAAATGTCTATTTATCCAAACGAAAGAGGAATGGGAAGAATGTGACGTTTGGGATCGTAAGGTACAACTCGTGGGAGGAGGCTACAAGGACTGTAAGAGGTACTAATGGAAAAGATCTTGAAGGTTTGAGGCTGGCAACAAATATTTCAAGGAACAACCCATTGAATAGGAAGAGCAGTAAAGTATGGAGGAATGTTCCAGATAGCGGGAGGATGAGCAAGCGGAATGTTGAGTCTTCCATCGTGGGAGCGGAGAAATCTGAAGATCGTGAGGTATTGATGGGGGATGAACATGTTGTGGGAAGCCTTAAGGTGCCAATGGAGATTAGAGGAACTGTTAATGAAGAGGCACTGGAATGGTGCAACAAGTGTGGTGTAATAAAGTTGAATAAAACAGTACCTAGAAATTATGCAGAAAAAGTTATAACGGATAAAATACCAGGAGTCATTAGCATGAAAGCCATAGACGCCAACTGGAACCTTGTTGAGTTCGATAGCGGATTGTCTAAGGAGGAAGGCATAACATGA 1941 0.4539 MSKRTAPDPVAVLRGHRASVMDISFHPSNPILFSGSADGELRIWNTLQHRTLSSAWLHSAAHGIVAVACSASLGTDKFVSQGRDGTVKLWDFGGAALSRTPLLTIKTNTYHFCKLSTVKTPSSHSEHRHRTELTGASDREIPEEDRREEACASKSCSESLEESMYREGLQYVALSGENSSEVEIWDLKSAERFARLPSNILSNSTNDCNKGRGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSICVDGSCKGGISGAADDKIVMYSLEQSSGTCVVKKEISLERPGISGTSIRPDEKIAATAGWDHRVRIYNYCKGNALAILKYHHATCNAVTYSSDCKLMASASEDTTVGLWELGRSTVRSYFSRRSRWEDATARAEIGSGVRGRNTLPRGSIRGGVSRGFTNSERNVRDDRNHSGLRRGKVSVFIDNIPWTIGRGWLWKMFKKFGWITNVYLSKRKRNGKNVTFGIVRYNSWEEATRTVRGTNGKDLEGLRLATNISRNNPLNRKSSKVWRNVPDSGRMSKRNVESSIVGAEKSEDREVLMGDEHVVGSLKVPMEIRGTVNEEALEWCNKCGVIKLNKTVPRNYAEKVITDKIPGVISMKAIDANWNLVEFDSGLSKEEGIT* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0221 646 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
Aev08g0221 646 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Aev08g0221 646 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Aev08g0221 646 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Aev08g0221 646 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 377 - -
Aev08g0221 646 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Aev08g0221 646 SUPERFAMILY RNA-binding domain, RBD 436 544 IPR035979 GO:0003676
Aev08g0221 646 Gene3D - 3 140 IPR015943 GO:0005515
Aev08g0221 646 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Aev08g0221 646 SMART rrm1_1 446 519 IPR000504 GO:0003723
Aev08g0221 646 Gene3D - 162 389 IPR015943 GO:0005515
Aev08g0221 646 SMART WD40_4 337 376 IPR001680 GO:0005515
Aev08g0221 646 SMART WD40_4 6 45 IPR001680 GO:0005515
Aev08g0221 646 SMART WD40_4 249 288 IPR001680 GO:0005515
Aev08g0221 646 SMART WD40_4 49 91 IPR001680 GO:0005515
Aev08g0221 646 SMART WD40_4 295 334 IPR001680 GO:0005515
Aev08g0221 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 515 IPR000504 GO:0003723
Aev08g0221 646 MobiDBLite consensus disorder prediction 416 436 - -
Aev08g0221 646 PANTHER - 3 378 - -
Aev08g0221 646 MobiDBLite consensus disorder prediction 121 153 - -
Aev08g0221 646 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Aev08g0221 646 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 377 IPR001680 GO:0005515
Aev08g0221 646 Gene3D - 390 554 IPR012677 -
Aev08g0221 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 523 IPR000504 GO:0003723
Aev08g0221 646 SUPERFAMILY WD40 repeat-like 9 376 IPR036322 GO:0005515
Aev08g0221 646 PANTHER TRANSDUCIN BETA-LIKE 3 3 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0221 Aev-Chr8 1241741 1249065 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0221 K24770 - gmx:100800482 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0221 08 1241741 1249065 Aev08g0221 08 1241741 1249065 ECH