Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0172 ATGCTATCGCTTCAGTCGTGTGGATTTTCCCGCGTTTCCTCAGCAAGATCGTTCCAATTTCAAAATTCACCTTCTCTCTTCTTCTCCGCTGCGAACTATAAATCTCGTCTTCGCATTGCGACAACAGTTACATCTTGTTCTGGTTTCGCCGGAGAATCAGGCTCCGATGTGGAGCAAGAACCGGTCGCTGAGACGACGACGAATTACGCCGGTGTGCAGTTGGAGGAGACGGTTGATAACAGGATCAGATCTGGAAAACTCAGACTCGATAGTTGGATCTCTTCTCGCATAAACGGAATCAGTAGGGCTCGCGTGCAATCAAGTATCAGAGCTGGACTTGTTCATGTCAATGGACGCGTCGTTGATAAGGTTTCTTTCAATGTCAAAGCTGGGGATGAGATCAAATGCACAATTTCAGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAATATACCTTTAGATATAGTTTATGAAGATGAGCATGTCCTAGTCATAAATAAAGCTGCACACATGGTTGTGCACCCAGCACCTGGAAATACATCTGGAACACTAGTCAATGGCATTCTTCACCATTGTAACCTCCCAAATGTTGAATATTCTAAAGAAGAAGCTCTTTCAGATAATGAAGACTCTGATGATGAGTCCAATAGCTTCTGTTCACATGCAAGTTCCTCCGAAGGGTTACATTCTAATCAGACTGTTGCATCAATTCGCCCAGGGATTGTTCACAGATTGGACAAAGGCACAAGTGGGTTACTCGTTGTTGCAAAGGATGAGCACTCTCATATGGAATTATCAGAACAATTTAAGCTGCGTACTATCAATAGGGTGTATGTTAGCCTGACAGCTGGGGTACCAAGTCCAGTTGCTGGACGTATCGAGGTTCCAGTTGGCCGTGATCTTAATAACCGGCTTCGTATGGCTGCTGTAGCTGGACCAGTCAATTCTAGAAATGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGTGGCAGTTGTGCATTGGTTGAGTGGAAGTTAGAAACCGGACGCACTCATCAGATCCGCGCACATGCCAAGTATCTGGGAGTTCCTCTGCTGGGTGATGAGGTTTATGGAGCGACAAAGAGCATGGTGCTATCACTGATTCGGCCCAGAACACCCTTGGGTTTACATAGCAAAATTGTACAGATGGTATCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACACTTGGGTTTCAGCATCCCCATACAGGGCAGCAGGTGCACTTTTCATGCGAGCCTCCTGCAGACTTTGATGAGATCTTGACTCAGCTTCGTATAATTGGCAATCAGAAGCTTTCTGCTTCAAAGCATTCTATTTTACGATGA 1365 0.4571 MLSLQSCGFSRVSSARSFQFQNSPSLFFSAANYKSRLRIATTVTSCSGFAGESGSDVEQEPVAETTTNYAGVQLEETVDNRIRSGKLRLDSWISSRINGISRARVQSSIRAGLVHVNGRVVDKVSFNVKAGDEIKCTISELQQLRAVPENIPLDIVYEDEHVLVINKAAHMVVHPAPGNTSGTLVNGILHHCNLPNVEYSKEEALSDNEDSDDESNSFCSHASSSEGLHSNQTVASIRPGIVHRLDKGTSGLLVVAKDEHSHMELSEQFKLRTINRVYVSLTAGVPSPVAGRIEVPVGRDLNNRLRMAAVAGPVNSRNARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGATKSMVLSLIRPRTPLGLHSKIVQMVSRLDRPCLHALTLGFQHPHTGQQVHFSCEPPADFDEILTQLRIIGNQKLSASKHSILR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0172 454 CDD PseudoU_synth_RluA_like 162 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev08g0172 454 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 86 438 - -
Aev08g0172 454 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 86 438 - -
Aev08g0172 454 ProSitePatterns Rlu family of pseudouridine synthase signature. 242 256 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev08g0172 454 SUPERFAMILY Alpha-L RNA-binding motif 86 174 - -
Aev08g0172 454 SMART s4_6 87 152 IPR002942 GO:0003723
Aev08g0172 454 ProSiteProfiles S4 RNA-binding domain profile. 87 160 - -
Aev08g0172 454 Gene3D - 71 143 IPR036986 GO:0003723
Aev08g0172 454 CDD S4 88 166 - -
Aev08g0172 454 Pfam RNA pseudouridylate synthase 161 356 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev08g0172 454 MobiDBLite consensus disorder prediction 201 230 - -
Aev08g0172 454 Pfam S4 domain 88 134 IPR002942 GO:0003723
Aev08g0172 454 SUPERFAMILY Pseudouridine synthase 147 438 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev08g0172 454 Gene3D Pseudouridine synthase 144 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0172 Aev-Chr8 973802 977985 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0172 K06180 - gmx:100810383 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0172 08 973802 977985 Aev08g0172 08 973802 977985 ECH