Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0163 ATGCCTACACTTGTTGCTGATGAGGCACTCACATCCAGCAATAATAATGTCGCCGCAGAACCACCAGCTTTGAGGCTACTGAAGCAAATCTCTAATGCAGCTTCGGGTGTTAAGGGCAAACAAGTGAGTGCAGTACTATCTCCAGAAGGTACTGGCCTCTCTGAATACATCGAATCAATCATCCGCAAGAACCCAGACATGGTGGAATCACCATTTATGGTCCTAGACCTTGGGGTCATCAAGCACCTCATGGACAAGTGGTCCACATTGCTCCCCACAGTGAAGCCTTTCTATGCAGTCAAGTGCAACCCCAACACATCACTGCTTGCCACGCTGGCAGCACTCGGTTCCAGTTTTGACTGTGCCAGCAAAGCAGAGATCGAGTCCGTTTTGTCACTCGGAGTCTCACCCGATCGCATCATTTATGCCAATCCATGCAAGTCAGAGTCCCACATCAAGTACGCAGCCAGTGTTGGAGTCAACGTCACAACCTTTGACTCCAAGGACGAGCTCCAAAAGATCAAAAAATGCCACCCAAATTGCGAGTTGCTCCTCCGCATTAAACCCCCACAGGACAGTGGAGCCCGAAACTCGTTGGGTCTAAAATACGGCGCACTCCCGGAAGAAATTCCGGAGCTCCTTCGAGCCGCGCAAGAAGCAGGCTTGAAGGTCACCGGTGTATCCTTCCACATTGGAAGTGGAGGAGCCGACGCAAAAGCGTACTATGGAGCCATCTCAGCTGCGAGAAGCGTCTTTGAGATGGCTTCCCAATTTGGAATGCCAAAAATGCACGTGCTCGATATAGGTGGCGGTTTCACAGCAGGCAAACAGTTTGAAACCGCCGCAGTGCACGTGAACGCAGCCATTGAAGCCAACTTCGCAGACGAAGAGGGACTCGTGGTTATTGGTGAGCCTGGTCGCTATTTTGCGGAGACTGCTTTTACGTTGGCGACGAGAGTTATTGGGAAGCGTGTGAGGGGAGAGTTGAGGGAGTATTGGATCGACGACGGGATTTATGGCTGTTTGAACTGTATAATGTTCGATTTTGCAACCGTCACTTGCAGGCCACTCATCATGTGCGGAGACTCGAAAATGTACTCTTCAACAGTGTTTGGACCCACATGCGATTCGCTTGATACGGTTCTGAGAGAGTACCAGCTACCGGAACTGCAGGTCAACGATTGGCTTGTGTTCCCGAATATGGGTGCTTATACGACGTCGTCTGGGACCAACTTCAATGGGTTCAGCACATCAGCCATCTCAACATACCTTGCATATTCCAGTTTTGTCATTAACGGAAAAACTATGCTCTAA 1314 0.5015 MPTLVADEALTSSNNNVAAEPPALRLLKQISNAASGVKGKQVSAVLSPEGTGLSEYIESIIRKNPDMVESPFMVLDLGVIKHLMDKWSTLLPTVKPFYAVKCNPNTSLLATLAALGSSFDCASKAEIESVLSLGVSPDRIIYANPCKSESHIKYAASVGVNVTTFDSKDELQKIKKCHPNCELLLRIKPPQDSGARNSLGLKYGALPEEIPELLRAAQEAGLKVTGVSFHIGSGGADAKAYYGAISAARSVFEMASQFGMPKMHVLDIGGGFTAGKQFETAAVHVNAAIEANFADEEGLVVIGEPGRYFAETAFTLATRVIGKRVRGELREYWIDDGIYGCLNCIMFDFATVTCRPLIMCGDSKMYSSTVFGPTCDSLDTVLREYQLPELQVNDWLVFPNMGAYTTSSGTNFNGFSTSAISTYLAYSSFVINGKTML* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0163 437 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 69 422 IPR009006 GO:0003824
Aev08g0163 437 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 311 402 IPR022643 GO:0003824
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 336 349 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 389 402 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 140 164 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 369 379 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 96 123 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 70 94 IPR002433 GO:0006596
Aev08g0163 437 PRINTS Ornithine decarboxylase signature 170 192 IPR002433 GO:0006596
Aev08g0163 437 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 79 310 IPR022644 GO:0003824
Aev08g0163 437 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 41 430 IPR002433 GO:0006596
Aev08g0163 437 Gene3D Alanine racemase 80 309 IPR029066 -
Aev08g0163 437 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 98 116 IPR022653 -
Aev08g0163 437 CDD PLPDE_III_ODC 69 423 - -
Aev08g0163 437 SUPERFAMILY PLP-binding barrel 70 313 IPR029066 -
Aev08g0163 437 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 256 273 IPR022657 -
Aev08g0163 437 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 118 130 IPR000183 GO:0003824
Aev08g0163 437 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 402 415 IPR000183 GO:0003824
Aev08g0163 437 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 98 116 IPR000183 GO:0003824
Aev08g0163 437 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 221 234 IPR000183 GO:0003824
Aev08g0163 437 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 301 320 IPR000183 GO:0003824
Aev08g0163 437 PANTHER ORNITHINE DECARBOXYLASE-LIKE 41 430 - -
Aev08g0163 437 SUPERFAMILY Alanine racemase C-terminal domain-like 296 419 IPR009006 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0163 K01581 - gmx:547682 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0163 08 934659 935972 Aev08g0163 08 934659 935972 ECH