Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0011 ATGTTGTTCCATTCATGCCCTCATCACATCAGAGCAAGATACATAGCAGCAAGCAACATCCATTCATTCATTCATCCGCGACGGACGGACAAGTCTAGAATGTCGTGTTTATTGCCACGCACCCACTTCAAGTGCCTCCCCGACACCTTCCGTACTCATCCCTATGTGCTTCCTACCCATCTAACGAAAACCAGAGATAACTTGTGTTTGCAGCCACACTGTATTGGTGTTCTCTCAACCGCAACAGCAGCGCCGCCCGTCCTTAATCTGCAACAGTTTGAGTTATCATCCACTTTGGATGCCCCTCATTCTCTTCCACTCACTGCAACCGCAACCACTCCCTGGCCCTATACTGCTCAACCTGAGCCTGAGGCCAAGTTTGAAGCAACCATGTCTACCGAATCACTTCTTACTAGTGAAGAGGCTGTAATAGCTGCCGCTGCTTCTGAAGCTGTTGCTCTTGCTAAAGCAGCTGCCAAGGTTGCAAAGGGTGCAGCTATGTTTGTAAAAAAGAAACCCCCTGCTGGGCCAGGGTACAGATCACATGTATCTTCCAATTCTGATAATTTACTCCTCAAATGGGTTCAGCATATGGAAACAGAAGATGCTGTAGCAGGAGGATCCATGTGTGCTGGAGCAGAAACAATGGAAAATTTTGACATAAACCTCAATGAAGAGGAATCTGATGATGTGGAACCTACCCATGAGGAACTTGAGCGTCTGCAGGAACAGGTTTCTGATAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAGAAGAGTCAGAGCAGCAGAGAAGACTGTCACAAATATTGTGTCTTTTAGGTCTGGATCCTCCAGCAGGAGAAAGCGTGCTCCTATGCAAGAAGTAGACTATTCTGATCCACTTCGTTACTTGAGAGCAACAACTAGCAGTACTAAGCTGCTCACTTCAACTGAAGAAATTGAGCTGTCCGAAGGAATACAGGACCTTCTAAAGCTGGAAAAGCTCCAAGAGGATCTTGCAGAAAGATGTGGTGGTCAGCCCACATTTGCTCAATGGGCTGCTGTGGCTGGGGTAGATCAGAAGACCCTCAGGAGGCGTTTAAACCATGGCAAGTTTTGCAAAGACAAAATGATCAAAAGCAACATACGACTTGTTATATCGATTGCGAGAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCCGAGGCCTTGTAAGAGGTGCAGAGAAGTTTGATGCTTCCAAGGGTTTTAAGTTCTCTACATATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGACCAGTCAAGGACTATTCGCTTACCATTCCACATGGTGGAGGCAACTTACAGAGTGAAAGAGGCAAGGAAGCAGTTCTATAGTGAAAACGGAAGACAACCCAGTGATGAAGAAGTTGCTGCAGCAACTGGACTGTCAATGAAGAGGCTTAATGCCGTTCTTATGACCCCAAAGGCTCCAAGATCTCTAGAACAGAAGATTGGGATTAACCAGAATCTAAAACCTTCAGAAGTGATTGCTGATCCTGATGCTGGAACAGCTGAAGAACAACTCATTAAACAATTCATGAAGGAGGACCTTGAAAAGGTACTGGACAGTCTGAATCCTAGAGAGAGGCAAGTCATAAGATGGAGATTCGGCATGGATGATGGAAGGATGAAGACCCTGCAAGAGATTGGTGAAATGATGGGTGTGAGTAGGGAGAGAATTAGGCAAATAGAGTCGTGTGCTCTTAGGAAACTTAAGAACAAGAAGAGAACCAAGCATTTCCAGCAGTATTTGGTTTCATAA 1830 0.4546 MLFHSCPHHIRARYIAASNIHSFIHPRRTDKSRMSCLLPRTHFKCLPDTFRTHPYVLPTHLTKTRDNLCLQPHCIGVLSTATAAPPVLNLQQFELSSTLDAPHSLPLTATATTPWPYTAQPEPEAKFEATMSTESLLTSEEAVIAAAASEAVALAKAAAKVAKGAAMFVKKKPPAGPGYRSHVSSNSDNLLLKWVQHMETEDAVAGGSMCAGAETMENFDINLNEEESDDVEPTHEELERLQEQVSDSIAVRSRRQTERKARRVRAAEKTVTNIVSFRSGSSSRRKRAPMQEVDYSDPLRYLRATTSSTKLLTSTEEIELSEGIQDLLKLEKLQEDLAERCGGQPTFAQWAAVAGVDQKTLRRRLNHGKFCKDKMIKSNIRLVISIARNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQFYSENGRQPSDEEVAAATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVIADPDAGTAEEQLIKQFMKEDLEKVLDSLNPRERQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCALRKLKNKKRTKHFQQYLVS* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0011 609 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 65 608 - -
Aev08g0011 609 ProSitePatterns Sigma-70 factors family signature 2. 568 594 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PRINTS Major sigma-70 factor signature 568 583 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PRINTS Major sigma-70 factor signature 399 412 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PRINTS Major sigma-70 factor signature 423 431 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PRINTS Major sigma-70 factor signature 583 594 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PRINTS Major sigma-70 factor signature 547 559 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 Gene3D RNA Polymerase Primary Sigma Factor 191 447 - -
Aev08g0011 609 CDD Sigma70_r4 537 595 - -
Aev08g0011 609 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 443 494 IPR013324 -
Aev08g0011 609 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 373 597 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 Pfam Sigma-70, region 4 543 595 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 Gene3D - 448 523 IPR036388 -
Aev08g0011 609 Coils Coil 224 244 - -
Aev08g0011 609 Gene3D - 529 609 IPR036388 -
Aev08g0011 609 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 507 605 IPR013324 -
Aev08g0011 609 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 296 445 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 Pfam Sigma-70 region 3 454 530 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 Pfam Sigma-70 region 2 375 444 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aev08g0011 609 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 65 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0011 Aev-Chr8 70417 73551 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0011 - - aprc:113864822 784.252