Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g1998 ATGGCCATGGCTCTTCGAAGGCTCTCCTCCACCATCAACAAACAAACCTCAACCTTCACCAACGCTTCTTCCCTTTATCGCATGTCTTCTTCTCTGTCGCCACAAGAAAGAGACAAATATCGCGCCGCTTGGGTGAAGCAGCTCAATGAGCCACTTGAGGTTATCGATCCTGAGATCGCGGACATAATCGAACTTGAAAAAGCTCGTCAATGGAAGGGTTTTGAGCTCATACCTTCGGAAAACTTCACGTCACTGTCAGTGATGCAAGCTGTTGGATCGGTGATGACAAATAAATACAGCGAAGGGTATCCTGGTGCTAGATACTATGGTGGAAATCAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTAATTTGGATCCGGCAAAATGGGGAGTCAATGTGCAGTCATTATCCGGATCCCCTTGTAACTTCCAAGTTTACACTGCTTTATTGAAGCCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGGATGAAAGCACTGGTTATATTGATTATGACCAGTTGGAGAAAAGTGCTACACTTTTTAGGCCAAAATTAATAGTAGCTGGTGCCAGTGCTTATTCTCGTCTTTATGATTATGCAAGAATTCGCAAGGTCTGTGATAAGCAGAAGGCAATTATGTTGGCAGATATAGCACACATCAGTGGATTGATTTCTGCAGGTGTTATTCCTTCTTGTTTTGATTATGCAGATGTTGTAACAACCACTACACACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGCAGGAAGTATTGTATGACTATGAAGATAAAATAAATCAGGCTGTTTTCCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGGCAATGACACCAGAATACAAGAATTACCAAAAGCAAGTTGTCCTTAACTGTGCAGCATTTGCAAAGAGTTTGCTAGAGAAAGGCTACGACATTGTATCTGGTGGAACAGATAACCATTTATTGTTGGTGAACTTAAGAAACAAGGGCATCGATGGCTCAAGGGTTGAAAAGGTGTTAGAAGCAGTTCATATAGCAGCGAATAAAAACACTGTTCCAGGGGATGTGTCTGCTATGATTCCTGGAGGCATTAGAATGGGGACCCCTGCTCTCACATCCAGAGGGTTTGTTGAGGAAGATTTTAGGAAAGTAGCTGAGTTCTTTGATGCAGGAGTCAAGTTAGCCTTACAGATTAAGGCAAATACCCAAGGTACAAAGTTGAAGGACTTTGTGGCAACTATGCAATCAGATGAACATCAATCTGAGATCGCTAAGCTCCGCCATGGGGTTGAGGAATACGCCAAGCAGTTTCCGGCTATTGGTTTCGAGAGTCAAAACATTTCTTTGCAGAAAAGCAACTACTTGATGGATTTGGATCAAAAGTATCTAGATTTTCGTGAATCACTTTCTTTGACAAAAGAAGGAACAGAATTGGACCCATCTTTGTATGTTCCCTTATTGCAAGAATGCTTAGACAAGAGCTCTTTTTCAGACACACAAGTTGTTCATAGTCATGTCATTAAAACTGGAACCCATGAAGACGTTTATGTCATGACATTTCTGGTCAATATTTATGCTAAATGTGGTTACATGGAGGATGCTCGCAAAGTGTTCGACAATATGCACAGAAGAACTGTGGTGGCTTGGACGACGCTAATGGCGGGCTATGTTCAGAACACGCGGCCAAAGCATGCTATCCATGTGTTTCAAGAAATGTTGTATGCTGGAAGTTACCCCTCAAATTACACTCTTGCTATTTCTCTAAGTGCTTGCACATCGCTTCAATCTATAGCGTTAGGGGATCAGTTTCATGCTTTCATAATCAAATATCGAATCGACTTCGAAACTAGCATTGGCAATGCACTTTGTAGTCTATACTCCAAATGTGCAAGATTGGAATTGGCTCTCAGAGTATTCAGGAGAATCAAAGAAAAGAATGTTGTTTCTTGGACTGCTGCAATATCTGCTTGTGGGGACAATGGTGAAGCTACGACGGGTTTAAGACTTTTCGCTGAGATGCTTTCTGAGGACATACAGCCTAATGAGTTCACTTTAACTAGTGTCTTGAGCCAATGTTGCGAGATTCTGTTATTGGAACTGGGGATTCAGGTTCATTCGATGTGTACTAAACTCGGGTATAAATCAAACCTGCGTATAAGGAATTCTTTGTTGTATTTGTACCTCAAATCTGGTTCTATTAGTGAGGCTCAAATTTTGTTTAAAGGAATTGATGATGCCAGTTTGGTTACATGGAATGCGATGATTTCTGGACATGCGCAAATGATGGAACTCACAAAGGATAATCTTTCTGCATGCCACAATGGAATTGAAGCACTCAACCTTTTCTCCAAGTTGAATCGGTCGGGCATGAAACCCGATCTGTTTACCTTCTCTAGTGCCCTAAGTGTCTGTAGTAGGCTGGTGGCTTTAGAGCAAGGGGAACAAATTCATGCTCAGGCCATAAAAACAGGGTTTTTGTCAGATGTTGTTGTGGGGACTTCACTGATTAATATGTACAATAAATGTGGAAGCATTGAGAGAGCGAGTAAAGCATTCCTAGAGATGTCTACTAGAACTATGATATCGTGGACTTCGATGATTGCAGGTTTTTCGCAGCATGGCCGGTCTCAGCAAGCATTGCAGATTTTCGAGGATATGAGACTAGCTGGAGTTAGACCAAACCAGATCACTTTTGTTGGAGTTCTATCGGCATGTGGCCATGCAGGCATGATCGATGAAGCACTCAATTTCTTTGAGATTATGCAGAAAAAATACAAAATTAAGCCTGTAATGGACCATTACAATTGCTTAATTGATATGTTCATAAGGTTTGGGCTGCTGGACAAGGCTTTCGATTTGATTAAGAAGATGGATTTTGAGCCTAGTGAGCATATTTTGTCAAACTTGGTAGCAGGTTGCTTAAGCTATGGGAATCTAGAACTGGCTTTTCAAGCGGCTGAGCAGTTACTAAGCCTTAAACCGAAAGATACCGAAACATACGTATTATTGTTGAATATGTACCATTCTGCAGGGAGATATGAGGATGCTTCTAGAGTTAGGAATATAATGAAAGATGAGAAAGTCAGAAAATTAGAAGATTGGAGCTGGATTAGCATCAAAGACAGAGTGTATTCATTTAAACCCAATGACAAGGCATTCCCACAAAGTTCACTAGTATATGAATCATTAGATGATTTACTTGCCAAAGCAAAGAATCTTGGATACAAGATGCTAGAAACTATGGAAATAAGTGATGAAGACGAGGACGAGGAGGAAGCCGAAAAGGCATCCTCGCCTACCATTTACCACGGCGAGAAGCTGGCGATTACATTTGGGTTGGAGAACTTGCCAAATTCTTCAACAATAAGAGTTGTCAAGAGTACCTTAATGTACAAGGATTGCCATAATTTTATCAAGTATGTCTCAACACTGACTGGTAGGGAAATCATTGTTAAAGATAGCAGAAGGCTTCATAAATTTGTCAAAGGACAATGCTCATGTGGGGATTTTAGTGTTTTTTTCTGA 3711 0.4136 MAMALRRLSSTINKQTSTFTNASSLYRMSSSLSPQERDKYRAAWVKQLNEPLEVIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNQYIDMAETLCQKRALEAFNLDPAKWGVNVQSLSGSPCNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYSRLYDYARIRKVCDKQKAIMLADIAHISGLISAGVIPSCFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGQEVLYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTPEYKNYQKQVVLNCAAFAKSLLEKGYDIVSGGTDNHLLLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFVEEDFRKVAEFFDAGVKLALQIKANTQGTKLKDFVATMQSDEHQSEIAKLRHGVEEYAKQFPAIGFESQNISLQKSNYLMDLDQKYLDFRESLSLTKEGTELDPSLYVPLLQECLDKSSFSDTQVVHSHVIKTGTHEDVYVMTFLVNIYAKCGYMEDARKVFDNMHRRTVVAWTTLMAGYVQNTRPKHAIHVFQEMLYAGSYPSNYTLAISLSACTSLQSIALGDQFHAFIIKYRIDFETSIGNALCSLYSKCARLELALRVFRRIKEKNVVSWTAAISACGDNGEATTGLRLFAEMLSEDIQPNEFTLTSVLSQCCEILLLELGIQVHSMCTKLGYKSNLRIRNSLLYLYLKSGSISEAQILFKGIDDASLVTWNAMISGHAQMMELTKDNLSACHNGIEALNLFSKLNRSGMKPDLFTFSSALSVCSRLVALEQGEQIHAQAIKTGFLSDVVVGTSLINMYNKCGSIERASKAFLEMSTRTMISWTSMIAGFSQHGRSQQALQIFEDMRLAGVRPNQITFVGVLSACGHAGMIDEALNFFEIMQKKYKIKPVMDHYNCLIDMFIRFGLLDKAFDLIKKMDFEPSEHILSNLVAGCLSYGNLELAFQAAEQLLSLKPKDTETYVLLLNMYHSAGRYEDASRVRNIMKDEKVRKLEDWSWISIKDRVYSFKPNDKAFPQSSLVYESLDDLLAKAKNLGYKMLETMEISDEDEDEEEAEKASSPTIYHGEKLAITFGLENLPNSSTIRVVKSTLMYKDCHNFIKYVSTLTGREIIVKDSRRLHKFVKGQCSCGDFSVFF* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g1998 1236 Pfam E motif 1038 1099 IPR046848 -
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Aev07g1998 1236 Gene3D Tetratricopeptide repeat domain 527 661 IPR011990 GO:0005515
Aev07g1998 1236 Gene3D Tetratricopeptide repeat domain 965 1105 IPR011990 GO:0005515
Aev07g1998 1236 Gene3D Tetratricopeptide repeat domain 872 964 IPR011990 GO:0005515
Aev07g1998 1236 Gene3D Tetratricopeptide repeat domain 663 760 IPR011990 GO:0005515
Aev07g1998 1236 Gene3D Tetratricopeptide repeat domain 761 871 IPR011990 GO:0005515
Aev07g1998 1236 SUPERFAMILY PLP-dependent transferases 47 503 IPR015424 -
Aev07g1998 1236 TIGRFAM PPR: pentatricopeptide repeat domain 923 956 IPR002885 -
Aev07g1998 1236 TIGRFAM PPR: pentatricopeptide repeat domain 609 641 IPR002885 -
Aev07g1998 1236 TIGRFAM PPR: pentatricopeptide repeat domain 958 991 IPR002885 -
Aev07g1998 1236 TIGRFAM PPR: pentatricopeptide repeat domain 710 744 IPR002885 -
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 921 955 IPR002885 -
Aev07g1998 1236 Pfam DYW family of nucleic acid deaminases 1154 1232 IPR032867 GO:0008270
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 956 986 IPR002885 -
Aev07g1998 1236 Pfam Serine hydroxymethyltransferase 53 449 IPR039429 -
Aev07g1998 1236 CDD SHMT 56 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aev07g1998 1236 SUPERFAMILY TPR-like 589 1066 IPR011990 GO:0005515
Aev07g1998 1236 Pfam PPR repeat 811 823 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat 895 918 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat 995 1019 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat 581 606 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat family 607 653 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat family 707 755 IPR002885 -
Aev07g1998 1236 Pfam PPR repeat family 923 967 IPR002885 -
Aev07g1998 1236 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 4 509 - -
Aev07g1998 1236 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 275 291 IPR019798 GO:0030170
Aev07g1998 1236 Gene3D - 81 354 IPR015421 GO:0003824
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Aev07g1998 1236 Gene3D Aspartate Aminotransferase, domain 1 56 500 IPR015422 GO:0003824
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1058 1092 IPR002885 -
Aev07g1998 1236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 606 IPR002885 -
Aev07g1998 1236 Hamap Serine hydroxymethyltransferase [glyA]. 51 503 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aev07g1998 1236 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 4 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g1998 Aev-Chr7 21150264 21160473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev07g1998 510 744 Glycoside Hydrolase AT3G49170 24.066 1.80e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev07g1998 - - gmx:100781103 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev07g1998 07 21150264 21160473 Aev07g1998 07 21150264 21160473 ECH