Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g2016 ATGCTGCCGCCAAAACATCACCCTTTGCTCAAACGCTGTATCTCTACTCACTCACCCCAATCTCCGCCACCAAAAACCTTCTCAACCATTCCACCACCACCGTCTCATAATGGTCTATCTCACATGGCCGACAAATGCACCACAATGGACCACCTCAAACAAGTACACGCCCAGATGATCGTCTCCGGCCGCATCCACGACCCCTTCGCCGCCAGCCGCCTCCTCTCCTCCTTCGCTCTCTCCCCCTTCGCCGACCTCACCACCGCTTCTAGAATCTTCTCCTCCCTCTCCTTCCCTCCCAACACCTTCATGTGGAACACCCTCATTCGCGCCCACGCCGCCGCCACCACCACCAAGAACAACAACCCCTTCCACTCCTTCTCCCTTTACGTCAGCATGAGGAGCCTCGGCGCTATCCCCGGAAAACACACCTTCCCCTTCCTCCTCAAGGCTTGCTCCCACATCCGCTCCCTCAAAGCTACCAAACAGGTCCATTCCCACGTGCTTAAATTCGGCCTCTCCTCTGATCCCCACGTGGTCAATGGTCTGGTCAGGGCTTACTCTGTTTCTGGCGATCTGGCCTGTGCGCGCAACGTGTTCGATGAAATTTCGCAGAGAAGTTTGAGTATTTGGACCACTATGGTTTGTGGATACGCTCAGAATTTCTGCTCCAACGAGGCCCTGGCGCTATTTGATGCGATGGTTAGTAAGGGGTTGGAGCCTAATGGCGCCATGCTGGCTTCAGTGCTGTCGGCTTGTGCGCGATCGGGTTGTCTTGAGCTTGGGGTGAGGATTCATGAGTTTATGAATGTGAAGGGGGTTGAAGTGGGAGTGATTCTTGGGACGGCGCTGGTTTACATGTATGCGAAGAATGGGGAGATTGCCATGGCAAGGAAGATGTTCGATGAAATGCGGGAGAGGAATGTTATTACTTGGAATGCTATGATCTGTGGTTTGGCTGCTCATGGACATGTTGAAGATGCTCTTGGTCTGTTTGAGAAGTTGAAGAAGGAGCAAGTTGTCGTTCCTAATGATGTCACATTTGTAGGGGTTTTATCAGCATGCTGTCATGCAGGATTGGTTGATGTTGGTCAGGATATTTTTTATTCGATGAAGAAGGTTTATGGGATTGAACCAAAGATTGAACATTATGGATGCTTGGTCGATCTTCTTGGGAGAGGGGGCAAGTTGCTAGAGGCAGAGGAACTGATAAAAGGAATGCCGTGGAAGGCTGATGTTGTTATTTTAGGAGCCTTGTTGGCAGCCTGCAAAAATAATGGGAATACTGAGGTTGCTGAAAGAGTGGTGAAAGAAATTCTTGCTCTCGAACCTCATAACCATGGAGTTCGTGTTGCTTTGTCAAATATGTATGCTGAGGCTGGACAGTGGCAGGAAGTATTGAGACTGAGGAAGATTATGAAAGAAGAGAGGCTAAAGAAATCTCCAGGGTGGAGCCTTGTGGCCACATGA 1470 0.5041 MLPPKHHPLLKRCISTHSPQSPPPKTFSTIPPPPSHNGLSHMADKCTTMDHLKQVHAQMIVSGRIHDPFAASRLLSSFALSPFADLTTASRIFSSLSFPPNTFMWNTLIRAHAAATTTKNNNPFHSFSLYVSMRSLGAIPGKHTFPFLLKACSHIRSLKATKQVHSHVLKFGLSSDPHVVNGLVRAYSVSGDLACARNVFDEISQRSLSIWTTMVCGYAQNFCSNEALALFDAMVSKGLEPNGAMLASVLSACARSGCLELGVRIHEFMNVKGVEVGVILGTALVYMYAKNGEIAMARKMFDEMRERNVITWNAMICGLAAHGHVEDALGLFEKLKKEQVVVPNDVTFVGVLSACCHAGLVDVGQDIFYSMKKVYGIEPKIEHYGCLVDLLGRGGKLLEAEELIKGMPWKADVVILGALLAACKNNGNTEVAERVVKEILALEPHNHGVRVALSNMYAEAGQWQEVLRLRKIMKEERLKKSPGWSLVAT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g2016 489 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 35 488 - -
Aev06g2016 489 Pfam PPR repeat 383 408 IPR002885 -
Aev06g2016 489 Pfam PPR repeat 210 239 IPR002885 -
Aev06g2016 489 Gene3D Tetratricopeptide repeat domain 33 188 IPR011990 GO:0005515
Aev06g2016 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Aev06g2016 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Aev06g2016 489 SUPERFAMILY TPR-like 287 467 IPR011990 GO:0005515
Aev06g2016 489 MobiDBLite consensus disorder prediction 1 32 - -
Aev06g2016 489 Gene3D Tetratricopeptide repeat domain 226 339 IPR011990 GO:0005515
Aev06g2016 489 Gene3D Tetratricopeptide repeat domain 340 486 IPR011990 GO:0005515
Aev06g2016 489 Pfam PPR repeat family 307 357 IPR002885 -
Aev06g2016 489 Pfam E motif 428 487 IPR046848 -
Aev06g2016 489 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Aev06g2016 489 TIGRFAM PPR: pentatricopeptide repeat domain 282 308 IPR002885 -
Aev06g2016 489 TIGRFAM PPR: pentatricopeptide repeat domain 210 242 IPR002885 -
Aev06g2016 489 PANTHER OS11G0483950 PROTEIN 35 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g2016 Aev-Chr6 17512650 17514119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g2016 39 487 Glycoside Hydrolase AT3G49170 33.187 5.56e-71 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g2016 - - mtr:MTR_7g033400 676.011