Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1562 ATGGAAGTTTCTGTTTCTCCACAAACACAAAAGCAGAGTTTACAAACAGCAGGTCGCAAAATTTCGGCTTACGGTTCCAAGAAGGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTGAGTGATTTAGAGGCGGCCTTGGCAGTATTAAAGAAGAGTGGGGGTAATATCAATTTGAGGAACACCTTTGGGCTGACCCCTCTTCATATTGCAACTTGGAGAAATCACATTCCCATTGTAACGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGGGAATCAGGGTGGAGTAGCCTTCACAGGGCCCTGCATTTCGGGCATCTTGCTGTGGCAAGCACACTTCTTCAGCATGGTGCCTCCATTACATTGGAGGACTCAAAATCTCGAATACCTGTAGATCTGCTATCTGGCCCTGTATTACAGGTTGTGGGAAATGATCGCAAGTCAGTGGCTACTGAGGTCTTTAGTTGGGGAAGTGGTGCAAATTATCAGCTGGGAACTGGCAATGCTCATATCCAAAAGTTACCATGTAAGGTCGATTCACTTAATGGATCATTCATAAAGTTGATTTCTGCGGCGAAGTTTCATAGTGTGGCACTTACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGGGGCCGTCTAGGGCACCCTGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACATCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACCGTTGTTGCTACTGAGGGTGGGGAAGTATTCACTTGGGGATCCAATAGAGAGGGGCAGCTGGGGTACACTTCTGTTGATACACAACCGACACCTCGTAGAGTGAGTTCTCTAAGGTCAAAAATCGTTGCTGTTGCCGCAGCAAACAAGCACACGGCTGTAGTTTCTGATATAGGTGAAGTTTTTACTTGGGGTTCCAATGAAGAGGGCCAACTTGGCTATGGAACCTCAAATTCAGCATCTAATTATACCCCACATGTGGTTGAGTCCTTGAAGGGAAAGACTTTAACCAAAGTTTCTGCTGCCAAATATCACACAGTTGTGTTAGGATCTGATGGAGAGGTATACACTTGGGGTCATCGACTCGTTACTCCAAAACGTGTAGTGATTTCTAGGAACTTGAAGAAAAGTGGAAGCACTCCTTTAAAGTTTCATCGTATGGAACGGCTTCATGTAGAATTTATAGCTGCAGGAATGGTTCATAGCATGGCACTTACAGATGATGGTGCATTATTTTATTGGGTTTCATCTGATCCTGATCTCAGATGCCGACAGCTGTATTCTATGTGTGGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGACTTCTGCAGTTACAACTACTGGTGATGTTTACCTGTGGGATGGGAAGAAAGGTAAGGATAAGCCACCTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACGTCAGTCTCTGTTGGTGAAACTCATTTGCTGATTGTGGCTTCCCTCTACCATCCTGCATATCCTCTCAACATGGTTGACAACTCGCAGAAGCTCAAGTTAAATCATAAGGATGATATGGAGGAGTTAAGTGAGGATATTTTATTTGAGGATATGGAATCCAATAATATAATATCTAGCATGCAAAAGGATACTTTTGGGCAGAGATCCGTTCCTAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGACTGTCTAGTGGAGCCACGGAATGCCATGCAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGAACTGAAGAAGTATTGTGAGGAGATTGTGCTGCGCAATCTTGATTATATATTTACAGTTTCATCCCATGCTGTGGCAAGCGCATCAGCGGATGTTCTGGCTAACCTTGAGATGTTGTTAGACCAGAGATCATCTGAGCCATGGAGTCATCGACGGTTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAAGACGATAGTGAAATAGAGTTTCAAAGAACTCGTGACAAACCCATGAAAATGTATGCATTGTTGGAGAATGATGAGAGAGGAGATTCCTTTCTACAGCCGAAGGATGATCCCAATCTAGAAACATCCAAAATAGTTCGAGCCATAAGGAAGAAGTTGCAGCAAATTGAGATGCTTGAAGCTAAGCAATCTAATGGGCATCTTCTCGATGACCAGCAGATTGCAAAGATTCAATCTAAATCAGCACTTGAGAGCTCACTTGCGGAGCTAGGTGTTCTCGTTGAGACTTCAAATAAAGAATCGTCTTCTGTATCACCAGAAGGGAAAGGTAGTAAGAAGGGTAAACAATCGAAAAAGCAGAGGAAAAAGAGTGGAAAACCAAATGCTGTTCAGACAGAAGTGGAATCCGTGTATTCTGCAATTGATCTGAGTCCTGAATCTGCGAAGGACTTGTTGGACACCGACATTGTGGTGGTTTCTAACTCAAAGGTGGAAGAGGATGCTGCACAAACCACAGCTGACCAAGGTGCAAGTGCAAAAGATTTAGCTTTTGTATTACAGAAGAAAGATGGTATAGAGCTGCCAAAGGGCCCGTCACCAAAGGTATCTAAGAAGAAGAGCAAGAAGGGTGGACTATCGATGTTTCTGAGTGGTGCTCTCGATGATGTTCCGAAAGAAGTGGCTCCTCCTCCACCAACACCAAAGAACGAGGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCTACTCTTCGTGAAATACAAGATGAGCAAAGCAAAACAAAGGGATACCAGCCAGTTAAGAGCAAAGATAAGGTGGAGGATCTTTCTGAATTTGGCAGTGGTGGGAAAGTGAAGTTGAGTTCATTCCTTCCTTCCAGTCCGATACCCGTAGCCCCATCTCGCGGCTCCCAGGCATCTGATGCAGAAATAAGTACTCCTCCTTGGGCTGCTTCAGGAACCCCTCCTCAGCGAACTCGGGCATCATTTAGGGACATCCAAATGCAACAGGGAAAGAAACAACAGAGCCTTTCCCACAGTCCAAAGACTAGAACAGCCGGATTCACCATTGCTACCGGTCAAGGCTCGCCCTCCGAAGCAACTGCAGTGAGCCGCTGGTTCAAGCCGGAAGTGGAGGCACCATCCTCAATCCGTTCTATACAGATCGAGGAAAAGGCCATGAAGGATCTGAAGCGCTTCTACAGCAGTGTGAAGATTGTTAGAAAGCAATCTTAA 3240 0.4574 MEVSVSPQTQKQSLQTAGRKISAYGSKKDLWLVVREGSLSDLEAALAVLKKSGGNINLRNTFGLTPLHIATWRNHIPIVTRLLAAGADPDARDGESGWSSLHRALHFGHLAVASTLLQHGASITLEDSKSRIPVDLLSGPVLQVVGNDRKSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSFIKLISAAKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVVATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDIGEVFTWGSNEEGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTVVLGSDGEVYTWGHRLVTPKRVVISRNLKKSGSTPLKFHRMERLHVEFIAAGMVHSMALTDDGALFYWVSSDPDLRCRQLYSMCGRNMVSISAGKYWTSAVTTTGDVYLWDGKKGKDKPPVATRLHGVKKATSVSVGETHLLIVASLYHPAYPLNMVDNSQKLKLNHKDDMEELSEDILFEDMESNNIISSMQKDTFGQRSVPSLKSLCEKVAADCLVEPRNAMQLLEIADSLGADELKKYCEEIVLRNLDYIFTVSSHAVASASADVLANLEMLLDQRSSEPWSHRRFPTPTATFPAIINSEEDDSEIEFQRTRDKPMKMYALLENDERGDSFLQPKDDPNLETSKIVRAIRKKLQQIEMLEAKQSNGHLLDDQQIAKIQSKSALESSLAELGVLVETSNKESSSVSPEGKGSKKGKQSKKQRKKSGKPNAVQTEVESVYSAIDLSPESAKDLLDTDIVVVSNSKVEEDAAQTTADQGASAKDLAFVLQKKDGIELPKGPSPKVSKKKSKKGGLSMFLSGALDDVPKEVAPPPPTPKNEGPAWGGAKFMKGSATLREIQDEQSKTKGYQPVKSKDKVEDLSEFGSGGKVKLSSFLPSSPIPVAPSRGSQASDAEISTPPWAASGTPPQRTRASFRDIQMQQGKKQQSLSHSPKTRTAGFTIATGQGSPSEATAVSRWFKPEVEAPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1562 1079 MobiDBLite consensus disorder prediction 924 947 - -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 857 876 - -
Aev06g1562 1079 Gene3D - 26 129 IPR036770 -
Aev06g1562 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Aev06g1562 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Aev06g1562 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Aev06g1562 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Aev06g1562 1079 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Aev06g1562 1079 SUPERFAMILY Ankyrin repeat 42 136 IPR036770 -
Aev06g1562 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Aev06g1562 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Aev06g1562 1079 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1078 - -
Aev06g1562 1079 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Aev06g1562 1079 Pfam Ankyrin repeats (3 copies) 49 127 IPR002110 GO:0005515
Aev06g1562 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 924 1036 - -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 885 911 - -
Aev06g1562 1079 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Aev06g1562 1079 SMART ANK_2a 62 91 IPR002110 GO:0005515
Aev06g1562 1079 SMART ANK_2a 96 125 IPR002110 GO:0005515
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Aev06g1562 1079 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Aev06g1562 1079 Coils Coil 520 540 - -
Aev06g1562 1079 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Aev06g1562 1079 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Aev06g1562 1079 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Aev06g1562 1079 CDD BACK 583 617 - -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 762 800 - -
Aev06g1562 1079 Gene3D - 130 389 IPR009091 -
Aev06g1562 1079 Gene3D - 390 510 IPR009091 -
Aev06g1562 1079 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1078 - -
Aev06g1562 1079 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 962 1036 - -
Aev06g1562 1079 MobiDBLite consensus disorder prediction 762 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1562 Aev-Chr6 11401831 11408036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1562 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 2.31e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1562 K24810 - gmx:100800604 1723.37