Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1539 ATGCTACTTCTTCTCACTCCCTCTTCTTCCTTCCTACACTCACCACTCACTATCACTCACACTGAAACAACAACAACAACAACTACTACTACACGCTCTCAACCTTTATTCCAGAAGCTACGAATAAGGAGAAGAAGAAGAAGAAGTAGAAGAAGAATGTTAGCTTGCCCTAGCAGCACCTTCCATGGCGGTGCTACCACACTCCACCACCACCGCCATCCTCAACCCCCTCGCCTCCTCCTCTCCGCCACCGCTCGTCCCCTCTTACGCCTCGCTGCTTCCGGAAAATGCAGGTCTCGCTCTCTTTCCCTCCTCTTTTCCGCCAACAATCGTAACAGATTAACTGTCAAAGCTTCTACTGAACCGTCGGAGATTCTGGAGGAAGGAGGTGGCGCGCACATTGCGATGCAGCCGTATTCCGTGAAGATTCCCGTTGGCGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGTTCCGTTACAGTTACAGATGGAGAGACAATTGTGTATACAACTGTTTGTTTGGATGATGTTCCTTGTGAGCCATCTGATTTTTTCCCTCTTTCTGTGCATTATCAAGAGCGTTTTTCAGCTGCTGGTCGCACTAGTGGAGGGTTTTTCAAACGAGAAGGAAAGACAAAGGATCACGAGGTTCTTACTTGTAGATTAATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTGTCTTGGGTTTTAAGTTATGATGGATTGCACTCCCCTGATTCTTTGGCGGTCACTGCAGCTGGCATAGCAGTTGCACTTTCAGAACTGCCAGTGTCCAAAGCAGTTGCTGGAGTTCGAATTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACAACTGAGGAGATGGAAAAGTCTGAGTTGGACCTTGTGCTGGCTGGCACAGACAGTGCAATATTGATGATTGAGGGCTATTGCAATTTTCTTCCTGAAGAGAAGTTACTCAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGTACAATCTGTAATGAAGTAGAAGCTTTGGTTAAGAAGTGTGGGAAACCAAAGATGTTTGATGCAATCAAGTTACCACCTCCTGAGCTTTATAAATATGTTGAAGAAATTGCTGGTGATGAGTTGGTAAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCACTTTCTACATTAGAAGAAAAGGTTCTGAAGATACTTTCAGAAAATGGGGTTGTCGATAATGATGAAACATCAAGGAGTAATGCTGAAACCATTGCAGAGATTCTTGATGAGGAGGATGAGGATGAGGAAGTTATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTCCACGCAAACCAACTCGTTTATTTGCTGAGGTTGATGTGAAGTTGGTTTTTAAAGAAGTTTCATCCAAGTTTTTGAGGAGACGCATTGTAGAGGGGGGAAGAAGAAGTGATGGGCGAGCACCAACTGGAATACGTCCAATCAACTCAAGATGTGGCCTACTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGAGGCGAGACACAGGCACTGGCTGTTGTTACACTTGGAGATAAGCAAATGGCACAAAGAATAGACAATCTTATAGATGTTGATGAATTCAAGAGGTTCTATCTTCAGTATTCATTCCCTCCTTCTTCTGTTGGGGAAGCTGGCCGAATTGGTGCACCAAATAGAAGAGAAATTGGCCATGGGATGCTTGCTGAGAGATCCCTTGAACCAATTTTGCCTTCAGATGATGATTTCCCTTACACTATACGTGTTGAGAGTACCATAACAGAAAGCAATGGCTCATCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTGGCATTGCAAGATGCTGGGGTTCCTATTAAGTGCTCTATTGCTGGAATTGCCATGGGTCTGGTACTGGACACTAAGGAATTCGGTGGTGATGGAACTCCACTTATTCTTTCTGACATAACTGGAGCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGGAATGAAGATGGCGTAACTGCATTTCAGATGGACATTAAGGTCGGAGGAATTACTTTGCCCATCATGAGAGAGGCACTCCTACAAGCAAGAGAAGGCAGGAAGGTTATCCTTGGTGAAATGATGAAATGCTCACCCCCTCCAACAAAAAGGCTTTCCAAGTATGCACCTTTGATTCACATAATGAAGGTCAAACCTGACAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAGTCTGGAATAGAGGGTATCGATACAGAAGATGATGGCACTGTGAAAATAACTGCTAAAGATTTGTCTAGTTTAGAGAGGTCTAAAGCTATTATTAGTAATTTGACTATGGTTCCAAATATTGGTGATATATATAGGAACTGTGAAATCAAGACAATAGCTCCATATGGAGTTTTTGTAGAGATAGCACCTGGGCGTGAGGGACTCTGCCATATCAGCGAACTTAGTTCAGGTTGGCTACCCAAGCCAGAAGATGCTTTCAAAGTGGGAGACCGCATTGATGTAAAGCTTATAGAGATAAATGATAAGGGACAGCTACGCCTTAGTCACCGAGCGATGCTTCCTGATACAGATCCAGACAAATCTAATGCTGATCAGCCTACTGGCGAACTCACTGAAGATGGTGCAACTTCCGAGAAATCCACTGGCAAGAGTTCATCAAAAAAAGGTGCCCGCGTGCCAAAAGATGGTTCAGCTGAAGCAAAGGGTGATAAAACTAGCACTTCCAAAGTCACGGTCTCATCTAAAAGGAGATCAGATGATGATTCTGTCATTCCATCAAGAAAGTTTATCAGGAAATTGGTTAACCCTTCCGAGGATAAGCCTTTCACTGACAAAGACAAGATAAAGAATAGTAGCAACGAAGAAGTTGGTACTGCCCCCGGTAAAGATGAAAGCAGTTTAGTTAGTGGAGAGGCATAA 3015 0.4338 MLLLLTPSSSFLHSPLTITHTETTTTTTTTTRSQPLFQKLRIRRRRRRSRRRMLACPSSTFHGGATTLHHHRHPQPPRLLLSATARPLLRLAASGKCRSRSLSLLFSANNRNRLTVKASTEPSEILEEGGGAHIAMQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPCEPSDFFPLSVHYQERFSAAGRTSGGFFKREGKTKDHEVLTCRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSELPVSKAVAGVRIGLVGDKYIVNPTTEEMEKSELDLVLAGTDSAILMIEGYCNFLPEEKLLKAVEVGQDAVRTICNEVEALVKKCGKPKMFDAIKLPPPELYKYVEEIAGDELVKVLQIRNKIPRRKALSTLEEKVLKILSENGVVDNDETSRSNAETIAEILDEEDEDEEVIVDGEVDEGDVHIKPTPRKPTRLFAEVDVKLVFKEVSSKFLRRRIVEGGRRSDGRAPTGIRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDNLIDVDEFKRFYLQYSFPPSSVGEAGRIGAPNRREIGHGMLAERSLEPILPSDDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGAEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPIMREALLQAREGRKVILGEMMKCSPPPTKRLSKYAPLIHIMKVKPDRINLIIGSGGKKVKSIIEESGIEGIDTEDDGTVKITAKDLSSLERSKAIISNLTMVPNIGDIYRNCEIKTIAPYGVFVEIAPGREGLCHISELSSGWLPKPEDAFKVGDRIDVKLIEINDKGQLRLSHRAMLPDTDPDKSNADQPTGELTEDGATSEKSTGKSSSKKGARVPKDGSAEAKGDKTSTSKVTVSSKRRSDDDSVIPSRKFIRKLVNPSEDKPFTDKDKIKNSSNEEVGTAPGKDESSLVSGEA* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1539 1004 MobiDBLite consensus disorder prediction 880 1004 - -
Aev06g1539 1004 MobiDBLite consensus disorder prediction 916 934 - -
Aev06g1539 1004 CDD S1_PNPase 813 881 - -
Aev06g1539 1004 CDD RNase_PH_PNPase_1 139 365 - -
Aev06g1539 1004 Pfam 3' exoribonuclease family, domain 1 507 640 IPR001247 -
Aev06g1539 1004 Pfam 3' exoribonuclease family, domain 1 148 278 IPR001247 -
Aev06g1539 1004 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 746 831 IPR036612 GO:0003723
Aev06g1539 1004 SMART S1_6 811 882 IPR022967 -
Aev06g1539 1004 SUPERFAMILY Nucleic acid-binding proteins 807 886 IPR012340 -
Aev06g1539 1004 SMART kh_6 742 807 IPR004087 GO:0003676
Aev06g1539 1004 SUPERFAMILY Ribosomal protein S5 domain 2-like 480 652 IPR020568 -
Aev06g1539 1004 Gene3D - 813 884 IPR012340 -
Aev06g1539 1004 SUPERFAMILY Ribonuclease PH domain 2-like 281 365 IPR036345 -
Aev06g1539 1004 Gene3D - 372 739 IPR027408 -
Aev06g1539 1004 ProSiteProfiles Type-1 KH domain profile. 743 803 - -
Aev06g1539 1004 MobiDBLite consensus disorder prediction 945 984 - -
Aev06g1539 1004 SUPERFAMILY Ribonuclease PH domain 2-like 634 738 IPR036345 -
Aev06g1539 1004 CDD RNase_PH_PNPase_2 507 734 - -
Aev06g1539 1004 ProSiteProfiles S1 domain profile. 813 882 IPR003029 GO:0003676
Aev06g1539 1004 MobiDBLite consensus disorder prediction 892 915 - -
Aev06g1539 1004 CDD PNPase_KH 743 803 - -
Aev06g1539 1004 SUPERFAMILY Ribosomal protein S5 domain 2-like 136 278 IPR020568 -
Aev06g1539 1004 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 120 965 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aev06g1539 1004 Gene3D - 130 363 IPR027408 -
Aev06g1539 1004 Gene3D K Homology domain, type 1 740 812 IPR036612 GO:0003723
Aev06g1539 1004 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 120 965 - -
Aev06g1539 1004 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 137 885 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aev06g1539 1004 Pfam S1 RNA binding domain 819 882 IPR003029 GO:0003676
Aev06g1539 1004 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 472 883 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aev06g1539 1004 Pfam 3' exoribonuclease family, domain 2 282 344 IPR015847 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1539 Aev-Chr6 11147888 11169950 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1539 K00962 - gmx:100785430 1361.28