Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g1408 ATGTGGGCTCTTCGTCGAGCTTCGATCCCTCTCAGGAACCAAGGGTTTAACGTAAGAGCTTCTTGTGCTTCTTGCGTCAAATCAATGCCAGTTACTACTTGTGTGGGAGATGAGGCTGGTGTTTCTGAGTATCCACGAATGCTATACGGTGCCTTTCTGTTGCCGAAGACATTTTACCATTCGGGGCACGGTTCCCTGAAATTTAATGTGAGCAGGCGTGAACTTTCTTCACAAGCTGATGCGAGTAGCACGAAAGAGCAGGATGATTTGGAGGAAGGGTTTTCTGAGCTGGAGGCTGGTGATGGAAACCGAAATGAAGACCTGTTAGCTTCTGATACGGAAGTATCTGATGACACCGAAGATGAAACACACAATGAACTGGAGTTGTCGGATACTGAGATTGAAACAAGTAAAAAAAAATCGTCTCGCAAGAGGGCTGAGTCAGAAATATTCAAGTTGATTATTGGTGCTCTGGGTAGTTCTGTTCATCAAGTTATGGACAACTGGGCTAAAGAAGGGGGAGAACTAAGTAGACAAGAGCTCTCGCTGGCAATGGTTAAACTTCGGAGGCGTAATATGTTTGCAAAAGCTTTGCAGCTCTCAGAGTGGGCAGAGGCAAAGAAACTGCTTGAATTTACTGAGAAAGATTATGCTGCTCGACTTGATTTGATTGCCAAATTGCGGGGTGTACAGAAGGCAGAGATGTACATTGATTCTATTCCAAAATCTTTTAGAGGGGAGATACTGTACCGAACCTTTTTAGCAAGTTGTGTTAGTCAGAACAATTTGAAGCAAGCAGAGGAAACTTTCAATAAGATGAAGGAGTTGGGTTTTCCTGTTTCATCATTCGTTTGCAACCAGTTGCTTCTTTTGTATAAGAGGAATGACAAGAAGAAGATAGCTGATGTATTATTGTTGATGGAAAATAATGATGTCAAACCTTCTCCTTTTACTTACAAAATATTAATCGACACAAAAGGCCAGTCCAATGACATTGGTGGAATGGATCAAATTGTTGACACGATGAAGGCTGAAGGGATTGAACCAGACATCGAAACAAAAGCAGTTTTGGTTAGGCATTACATTTCACATGGGCTTCAAGAAAAAGCTGAAGCTATGTTGAAGGAGATGGAAGGTGAAAACCTGAATGAGAATAGTTGGATAAGCCGATATTTACTTCCCCTCTATGCGAACTTGCAGAAGGCAGACGAAGTGGTAAGAATTTGGGAAGTTTGCAAGTCACACCCTCGGATTGAGGACTGTTTGGCTGCAATTGAAGCTTTTGGGAAGTTGAAGAAAGTTGATGAAGCAGAGGCAGTTTTTGAGATGATGCAAAAGAAATGGAAGCTTTCTTCCAAGAACTGCTCAGTAATGCTCAAGGTTTATGCAAGTCATAAGATGGTAACAAAGGGCAAGGATCTCATCAAGCGAATGGCAGATAATGGCTGCCGAATCGGCCCATTGACTTGGGACGCGTTAGTGAAACTTTACGTCCAAGCGGGTGAAGTCGAGAAGGCAGATTCTGTTCTACAGAAGGCAATCCAGCAGAACCAAGTGAAGCCATTGTTTTCTTCTTACATTACTATCATGGAGCAGTATGCTAAGAGGGGTGATGTCCATAATGCAGAAAAGATTTTCTACAGAATGAAACAGGCTGGTTATGCGTCGCGATCGAGGCAGTACCAAGTTCTAGTACAGGCCTATATAAGTGCCAAGCAACCGGCCTACGGGATTAGGGACAGGATGAAGGCTGATAACGTATTTCCCAACAGAGGTTTTGCAAATCAGTTGGTTCTAGTTGATGGATTTAGGAAGAATCCAGTTTCTGATTTGCTTGATTGA 1842 0.4283 MWALRRASIPLRNQGFNVRASCASCVKSMPVTTCVGDEAGVSEYPRMLYGAFLLPKTFYHSGHGSLKFNVSRRELSSQADASSTKEQDDLEEGFSELEAGDGNRNEDLLASDTEVSDDTEDETHNELELSDTEIETSKKKSSRKRAESEIFKLIIGALGSSVHQVMDNWAKEGGELSRQELSLAMVKLRRRNMFAKALQLSEWAEAKKLLEFTEKDYAARLDLIAKLRGVQKAEMYIDSIPKSFRGEILYRTFLASCVSQNNLKQAEETFNKMKELGFPVSSFVCNQLLLLYKRNDKKKIADVLLLMENNDVKPSPFTYKILIDTKGQSNDIGGMDQIVDTMKAEGIEPDIETKAVLVRHYISHGLQEKAEAMLKEMEGENLNENSWISRYLLPLYANLQKADEVVRIWEVCKSHPRIEDCLAAIEAFGKLKKVDEAEAVFEMMQKKWKLSSKNCSVMLKVYASHKMVTKGKDLIKRMADNGCRIGPLTWDALVKLYVQAGEVEKADSVLQKAIQQNQVKPLFSSYITIMEQYAKRGDVHNAEKIFYRMKQAGYASRSRQYQVLVQAYISAKQPAYGIRDRMKADNVFPNRGFANQLVLVDGFRKNPVSDLLD* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g1408 613 MobiDBLite consensus disorder prediction 97 111 - -
Aev06g1408 613 PANTHER OS01G0280400 PROTEIN 25 613 - -
Aev06g1408 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Aev06g1408 613 Pfam Pentatricopeptide repeat domain 277 327 IPR002885 -
Aev06g1408 613 MobiDBLite consensus disorder prediction 112 128 - -
Aev06g1408 613 PANTHER OS12G0527900 PROTEIN 25 613 - -
Aev06g1408 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 521 IPR002885 -
Aev06g1408 613 Gene3D Tetratricopeptide repeat domain 246 419 IPR011990 GO:0005515
Aev06g1408 613 Pfam PPR repeat 525 553 IPR002885 -
Aev06g1408 613 Pfam PPR repeat 456 483 IPR002885 -
Aev06g1408 613 Pfam PPR repeat 489 512 IPR002885 -
Aev06g1408 613 Pfam PPR repeat 425 447 IPR002885 -
Aev06g1408 613 Gene3D Tetratricopeptide repeat domain 424 611 IPR011990 GO:0005515
Aev06g1408 613 MobiDBLite consensus disorder prediction 78 141 - -
Aev06g1408 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Aev06g1408 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Aev06g1408 613 TIGRFAM PPR: pentatricopeptide repeat domain 525 554 IPR002885 -
Aev06g1408 613 TIGRFAM PPR: pentatricopeptide repeat domain 249 281 IPR002885 -
Aev06g1408 613 TIGRFAM PPR: pentatricopeptide repeat domain 425 447 IPR002885 -
Aev06g1408 613 TIGRFAM PPR: pentatricopeptide repeat domain 455 484 IPR002885 -
Aev06g1408 613 SUPERFAMILY TPR-like 380 552 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g1408 Aev-Chr6 9793567 9796598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g1408 165 553 EF-hand Containing Proteins AT1G02150 23.881 4.83e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g1408 - - gmx:100500196 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g1408 06 9793567 9796598 Aev09g1863 09 22168668 22169078 ECH
Aev06g1408 06 9793567 9796598 Aev06g1408 06 9793567 9796598 ECH