LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g0641	ATGGCTCCGTCGCGTCGCAACAGCAATGGCCGATCGCCACTCGTAAACCAACAAAGCCAAATCACCGCTTTCTTCTCCAAATCCACTTCTTCTCCTTCTTCCATTCTCTCCAAACCCACCACCACCAACAAAAGCAATCCAAACCCTAACCCTAACCCTAGCTCTAGTCCTTCCCCTCCCACCCCTTCCCCTACCAACCCCAAATCACAGCACCGCAAGCCACTCCTTCTCATCGGTGCTTCTCCCTCTCCATCCCCTTCTTCATCTTCTCTCTACTCCAACGACGTCGTTGGCAGAAGGGTCAAGGTTTATTGGCCTCTTGATAAAGCCTGGTATGAAGGCACTGTTAAGTCTTTTGATCATGCTGCCTCCAAGCATTTGGTTCAATACGACGATGACGAAGAGGAATCCCTTGATCTCTCCAAGGAGAAGATCGAATGGATTCACCATTCTTCATCCTCTGCCCCGAAGAAGCTCAAGCGGTTGCGACGTGGTACTCCCGCTATTAGGAAGATGGTGATTGATGACGATGAGGTCGGGGAAAGTCCAAAAGAAGAAGAAGATAATGATGGTGATGATTCCAGCGATGAAGATTGGGGGAAGAGTGCGAAGGTTGAGGATGCTGAAGCTGAAGATGAAGAGGATGTGGAGCTAGAGGACGAAGAAGATGAAAGTGCAGAGAAGTCTAAAAGAAAGCCAAATGCAAAGGTGGAGCCCAAAAAGCGGAAGCTGGGTGCAGCAGAGAAACCGGAAACTGCAAAAAAGAGCAAGACAGTTAGTGAATTTGGTGGTGTTAAAGGAAGCTCGAGTAACTTGGAGATTAAAAAGACATCTAATGGCGTAGACAATGTTGCAAATGATGATGCCTCTGAAAGATTTTCGGCTCGTGAAGCTCAGAAATTCCGCTTCCTGAGAGAAGATCGGAGAGATGCCAAACGAAGGCGTCCCGAGGATGAAAATTATGATCCTAAAACTCTCTATTTGCCTCCAGATTTTGTTAGGAGTTTGTCAGATGGCCAGAAACAGTGGTGGGAATTCAAGTCGAAGCATATGGACAAAGTTTTATTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTTGACCTGCAGTATATGAAGGGAGAACAACCCCATTGTGGATTTCCGGAGAGGAACTTCTCAATGAATGTGGAGAAACTTGCCAGGAAGGGTTATCGAGTTCTTGTGGTGGAGCAGACTGAAACACCTGAACAGTTGGAGCGTCGTCGCAGGGAGAAGGGTTCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTTGTTTCCAAAGGTACATTAACCGATGGGGAGTTGTTGTCAGCAAACCCTGAAGCTGCATATTTGATGTCACTGACTGAGCATGAAAAAAATGCCGATGAAAATTTGGAGCGTACTTATGGTGTTTGCATAGTTGATGTTGCCACAAGCAGAGTCATTATTGGACAGTTTAAGGACGACTTGGAGTGCAGTGCCTTGTGCTGTATATTGTCTGAGATCAGGCCAGTTGAAATAGTGAAACCTGCTAAAGTGCTTAGCGCTGAAACAGAGAGGATACTGTTGAAGCATACTAGAAATCCTCTTGTGAATGAATTGGCTCCAGTTGTGGAATTTTGGGATGCTGAGAAAACTGTGGATCAATTGAAAAGAATTTACAGTCACTCTAATGATGTTAGTGTTGATGATAACGAATTAGGTTGCCTGCCAGATGTCTTGCTAGACCTGGTGAAAACTGGTGATGATGGTAAAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTACCTGAAACAGGCTTTCCTTGATGAGGCATTGCTTAGATTTGCACAGTTTGAGTTACTTCCATGTTCTGGTTTCTCCGACCTTGCTTCAAAACCATACATGGTTCTTGATGCAGCAGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGAAATGGAGGTTCTTCAGGCACACTGTATGGCCAATTAAACCAATGTGTTACTGCGTTTGGAAAGAGATTGCTAAAAGCATGGCTTGCTAGACCATTATGTCATATAGATGCAATTAAGGAACGCCAGGAATCTGTTGCAGGCTTAAAGGGAGTTAATTTACCTTGTGCACTAGAATTTCGGAAAGCATTATCCAAGCTACCTGACATGGAGCGACTGCTTGCTCGCATATTCTCCACTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGATTCTGTATGAGGATGCAGCGAAGAAACAACTGCAAGAATTTATTTCAGCTCTTCGGGGTTGTGAACTAATGGCAGAAGCATGCTCTTCACTTGGTGTCATTTTGAATGATGTCAAATCGAAACAACTTCATCATTTGTTAACACCTGGTAAAGGTCTTCCTGATGTCTCTGGCGCTCTCAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGTCGTGTAATACCTCGTGAAGGAGTTGACGTAGAGTATGACTCAGCCTGTAAGACAGTTAAAGAAATTGAATCCAGTTTGTCAAAGCATCTTAAGGAACAAAGGAAATTACTTGGAGACACATCAATCACCTATGTTACTATTGGAAAGGATGCATACCTATTAGAAGTACCAGAAAATTTGCGTGGGAATATTCCCCGGGATTATGAGCTACGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATCAAAAAGTTCTTGAAAGAACTCTCCCAAGCTGAATCTGAAAAGGAGTCCTTGTTGAAAAGCACATTGCAGAGACTACTTGGGCGTTTTTGTGAAAGTCACACTAAATGGAGGCAGTTGGTGTCTACCACGGCTGAGCTGGATGTTTTGATCAGTTTAGCTATTGCTAGTGACTACTATGAAGGACCAACATGCAGACCAAGTTTCTTAGGCACATTATGCACAAAAGATTCACCGTATCTCTATGCTAAAAGTTTGGGACACCCAGTTCTTAGGAGCGATTCCTTAGGCAAGGGTGCCTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTCCTTCGCCAAGTTTGCTTGGCTGTAATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCAACTGTGGACCGAATTTTTGTTCGAATGGGTGCCAAAGATAATATCATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGTAATTCACTGGTGGCTCTGGATGAGCTTGGTCGTGGGACCTCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTACTAGAACATTTTGTGCGTAAGGTGCAGTGTCGTGGATTGTTTTCCACTCATTATCATCGATTAGCTATAGATTATCAAAAAGATCCGAAGGTCTCTCTCTGCCACATGGCATGCCAAGTCGGTGGTGGAATATCAGGTGTGGACGAAGTCACCTTTCTTTACAGGCTGACCACTGGTGCATGCCCCAAAAGCTATGGTGTTAATGTTGCTCGGTTAGCTGGACTTCCGACTTCTGTGCTCCAGAAGGCTGCTGCTAAGTCGAGAGAATTCGAGGCTACTTATGGTAAATGCAGAAACGTGCCTTCTGAACCGAACTCTTCAGTTCAGGAGGATTGTGATGATGAGATGACAGTTGTCATGAAAAAATTGAACAAGGCTGTTACAAATTTGAGTTGCCAGGATGCCATTAGCGACAGTTCCCTGTATGAACTTCAGGGTAGAGCAAGAGAACTCCTGCTGCGATGTTAA	3852	0.4426	MAPSRRNSNGRSPLVNQQSQITAFFSKSTSSPSSILSKPTTTNKSNPNPNPNPSSSPSPPTPSPTNPKSQHRKPLLLIGASPSPSPSSSSLYSNDVVGRRVKVYWPLDKAWYEGTVKSFDHAASKHLVQYDDDEEESLDLSKEKIEWIHHSSSSAPKKLKRLRRGTPAIRKMVIDDDEVGESPKEEEDNDGDDSSDEDWGKSAKVEDAEAEDEEDVELEDEEDESAEKSKRKPNAKVEPKKRKLGAAEKPETAKKSKTVSEFGGVKGSSSNLEIKKTSNGVDNVANDDASERFSAREAQKFRFLREDRRDAKRRRPEDENYDPKTLYLPPDFVRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLERRRREKGSKDKVVRREICAVVSKGTLTDGELLSANPEAAYLMSLTEHEKNADENLERTYGVCIVDVATSRVIIGQFKDDLECSALCCILSEIRPVEIVKPAKVLSAETERILLKHTRNPLVNELAPVVEFWDAEKTVDQLKRIYSHSNDVSVDDNELGCLPDVLLDLVKTGDDGKSALSALGGALYYLKQAFLDEALLRFAQFELLPCSGFSDLASKPYMVLDAAALENLEIFENSRNGGSSGTLYGQLNQCVTAFGKRLLKAWLARPLCHIDAIKERQESVAGLKGVNLPCALEFRKALSKLPDMERLLARIFSTSEASGRNANKVILYEDAAKKQLQEFISALRGCELMAEACSSLGVILNDVKSKQLHHLLTPGKGLPDVSGALNHFKDAFDWVEANNSGRVIPREGVDVEYDSACKTVKEIESSLSKHLKEQRKLLGDTSITYVTIGKDAYLLEVPENLRGNIPRDYELRSSRKGFFRYWTPDIKKFLKELSQAESEKESLLKSTLQRLLGRFCESHTKWRQLVSTTAELDVLISLAIASDYYEGPTCRPSFLGTLCTKDSPYLYAKSLGHPVLRSDSLGKGAFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFDLSTVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAIDYQKDPKVSLCHMACQVGGGISGVDEVTFLYRLTTGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEATYGKCRNVPSEPNSSVQEDCDDEMTVVMKKLNKAVTNLSCQDAISDSSLYELQGRARELLLRC*	1284

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aev06g0641	1283	SMART	DNAend	663	1004	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	SMART	mutATP5	1024	1216	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	224	256	-	-
Aev06g0641	1283	SUPERFAMILY	DNA repair protein MutS, domain I	325	448	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	147	274	-	-
Aev06g0641	1283	Gene3D	-	975	1257	IPR027417	-
Aev06g0641	1283	Gene3D	DNA repair protein MutS, domain I	295	456	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	PIRSF	Msh6	2	1267	IPR017261	GO:0006298\|GO:0030983
Aev06g0641	1283	Gene3D	-	88	146	-	-
Aev06g0641	1283	SUPERFAMILY	DNA repair protein MutS, domain III	646	970	IPR036187	-
Aev06g0641	1283	Gene3D	-	644	964	-	-
Aev06g0641	1283	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	243	1254	-	-
Aev06g0641	1283	Pfam	MutS domain II	463	614	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	243	1254	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	50	67	-	-
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	208	223	-	-
Aev06g0641	1283	SUPERFAMILY	Tudor/PWWP/MBT	95	136	-	-
Aev06g0641	1283	Pfam	MutS domain III	649	964	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	179	195	-	-
Aev06g0641	1283	Coils	Coil	911	931	-	-
Aev06g0641	1283	Pfam	MutS family domain IV	833	924	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	Gene3D	-	809	940	-	-
Aev06g0641	1283	Pfam	MutS domain V	1028	1218	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	986	1219	IPR027417	-
Aev06g0641	1283	Pfam	MutS domain I	340	452	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	1	49	-	-
Aev06g0641	1283	Gene3D	MutS, connector domain	461	643	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	SUPERFAMILY	DNA repair protein MutS, domain II	458	658	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aev06g0641	1283	SMART	TUDOR_7	93	151	IPR002999	-
Aev06g0641	1283	MobiDBLite	consensus disorder prediction	1	93	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g0641	Aev-Chr6	4405798	4413734	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g0641	K08737		-	gmx:100811104	1905.95

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev06g0641	06	4405798	4413734	Aev06g0641	06	4405798	4413734	ECH