Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev06g0401 | ATGGGGCTGAAGAAGATGCTGAAACCAGTCGCAAGACCGCCGCAACAGTCACCATATCCACCGCCGCCACCACCACAGTCTCCGATCCCGAACCCTCCCCTCCCATCACCACCACCAGAGCCTTGTCTCCCACCGCCACCACCAACACTGACTCTCACCCCAATCGCACCCTCCCAGTACCACCGCCTCCTCGACTTCCTCAAATCGCACCTCACCCCTCCCTTCACCCCTGACTCACTCCTCCACTTCCTCAAATCAAAGCTCCACCACCACCCCTCCTTCTCCCACTACGACTTCCACATCTTCACCTGGGCCTCCTCCGTCGACTCCTTCCGCCATACCCACTCCACCTTCCTCTGGATGGCCCAAATCCTCTCCCTCTCCCACCGCTTCCTCCAACTCCGCTCCCTCCTCGACTTCATCTCCTCCAACCCTTGCCCCTGTTCCAACACCATCTTCTCCTGCCCCCACACCGAACCCATTTTCCGTTTCGCCATCAACGCTTACTGCAAATCCGGAAAACTTGACGACGCCGTTTTCGCGTTTAACTGCATGCGGAGGTTGATTGATGGGAGGCCCAATGTCGCGGTTTGTAATGCTCTGCTTCATGGGTTTGTGAAATGGGGTAGGCTTGATAGGGCTCTGGAGTTTTATTACGGTGACATGGTTAGGGATAGGGTTAGGCCTGATGTGTTCACTTTCAACATTTTGATCAGTGGTTATTGTAGGAATTTGAAGTTTGAGTTGGCATTGGAGCTTTTCAAGGAGATGGGGAAGATGGGGTGTGAGCCAAATGTGGTTACTTTTAATACTTTGATTAAGGGTATGTTCAGGGAAGGGAAGGTTGAGGAAGGGATTGAGATGGCTCATGAGATGATTGAGCTGGGGTGCCAATTCTCCAATGTGACTTGTGAGATCCTGGTTCATGGGCTTTGTGTGAAAGGTAGGGTTTTGGAGGCGTGTGAGATGTTGGTTGGTTTCTCCAAAAGGGGTGTTTTGCCTAAAGGATATGATTACTTTGATTTGGTGGAGGCTCTTTGTGTGAATGGAGATGCTGTTAGGGCATTGGAGCTTGTTTATGAGATGTGGGAAAATGGATGTGTTCCGAGCTTGATTGCTTGCACTGTGATGGTTGATGGGTTGAGAAAACTGGGAAAGACTGAAGAAGCTTGGAGATTGGTGGAAAAGATGCTTAAAGAGGGTATGGTGCTAGATGTTGTGACTTTCAATTCTGTGCTTCAAGGTATTTGTAATGTGGGAAGAACAGAAGAAGCAAACAAGTTGAGATTACTTGCTTCAATCAAGGGTTTGGAGCCAGATGCCATGACATTTAAAATTTTGGTTACTGGTTTTATGGGAGAGGGGCATCGAACTGAGGGAGAGTCAGTGGTAAATGAAATGTTGGATAGGGGATTCATACCTGATCTTGCTTCATACAATAAACTGATGAATGGATTATCCACTTGTCGACGACACTCTAAGCGCCGTCACGTTAACAAACTTGATCACTGA | 1512 | 0.4907 | MGLKKMLKPVARPPQQSPYPPPPPPQSPIPNPPLPSPPPEPCLPPPPPTLTLTPIAPSQYHRLLDFLKSHLTPPFTPDSLLHFLKSKLHHHPSFSHYDFHIFTWASSVDSFRHTHSTFLWMAQILSLSHRFLQLRSLLDFISSNPCPCSNTIFSCPHTEPIFRFAINAYCKSGKLDDAVFAFNCMRRLIDGRPNVAVCNALLHGFVKWGRLDRALEFYYGDMVRDRVRPDVFTFNILISGYCRNLKFELALELFKEMGKMGCEPNVVTFNTLIKGMFREGKVEEGIEMAHEMIELGCQFSNVTCEILVHGLCVKGRVLEACEMLVGFSKRGVLPKGYDYFDLVEALCVNGDAVRALELVYEMWENGCVPSLIACTVMVDGLRKLGKTEEAWRLVEKMLKEGMVLDVVTFNSVLQGICNVGRTEEANKLRLLASIKGLEPDAMTFKILVTGFMGEGHRTEGESVVNEMLDRGFIPDLASYNKLMNGLSTCRRHSKRRHVNKLDH* | 504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 342 | 370 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 197 | 231 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 406 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 266 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 267 | 298 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 302 | 334 | IPR002885 | - | |
| Aev06g0401 | 503 | TIGRFAM | PPR: pentatricopeptide repeat domain | 443 | 475 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 440 | 474 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 405 | 439 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Aev06g0401 | 503 | MobiDBLite | consensus disorder prediction | 13 | 50 | - | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | IPR002885 | - | |
| Aev06g0401 | 503 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 370 | 404 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat | 342 | 367 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat | 197 | 218 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat | 166 | 187 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat | 302 | 331 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 335 | 369 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat family | 229 | 277 | IPR002885 | - | |
| Aev06g0401 | 503 | Pfam | PPR repeat family | 369 | 418 | IPR002885 | - | |
| Aev06g0401 | 503 | Gene3D | Tetratricopeptide repeat domain | 220 | 325 | IPR011990 | GO:0005515 | |
| Aev06g0401 | 503 | PANTHER | FERTILITY RESTORER HOMOLOGUE A-LIKE | 22 | 491 | - | - | |
| Aev06g0401 | 503 | SUPERFAMILY | HCP-like | 167 | 398 | - | - | |
| Aev06g0401 | 503 | Pfam | Pentatricopeptide repeat domain | 434 | 484 | IPR002885 | - | |
| Aev06g0401 | 503 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 194 | 229 | IPR002885 | - | |
| Aev06g0401 | 503 | Gene3D | Tetratricopeptide repeat domain | 326 | 431 | IPR011990 | GO:0005515 | |
| Aev06g0401 | 503 | Gene3D | Tetratricopeptide repeat domain | 432 | 500 | IPR011990 | GO:0005515 | |
| Aev06g0401 | 503 | Gene3D | Tetratricopeptide repeat domain | 96 | 219 | IPR011990 | GO:0005515 | |
| Aev06g0401 | 503 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 22 | 491 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev06g0401 | Aev-Chr6 | 2936641 | 2938152 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev06g0401 | 161 | 500 | Glycosyltransferase | AT1G05670 | 32.059 | 4.70e-43 | 160 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev06g0401 | - | - | aprc:113860936 | 669.463 |