Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0258 ATGCAGCAAGGTGCCATGGCAGGAAGCCACCTCTTTTCCTACAGCCCTTCCATCCCCAAAACCTCCTTCATTCACTCCCTCTCCCAAAACCCATTTCCCCAAAACCTAGTTGTACCCCTCAAGCTCAAAGCTTTTATCAAGCCGCGTGTTCTCAGAGCGGTTCTCTCCCAGAACACTGCCGTCGAAAACCCCAAAGCGAAGACTCATTTCAAGCACTGTTTCACCAAATCCGATGATGGGTTCCTCTACTGTGAGGGAACCAAGGTGCAGGAGATCATGGAATCCGTTGAGAGGAGACCCTTCTACTTGTACAGCAAACCCCAGATTACTAGGAACGTTGAGGCCTACAAGGATGCATTGGAAGGATTGAACTCTATCATTGGTTATGCCATCAAGGCCAACAACAACTTGAAGATTCTTGAACACTTGAGGCACTTGGGCTGTGGTGCTGTGCTTGTCAGTGGCAACGAGCTTAGACTTGCTCTTCGTGCTGGATTTGATCCCAAAAGGTGTATATTCAATGGGAATGGGAAGATATTGGATGATTTGGTCTTGGCTGCACAAGAAGGAGTGTTTATCAACATTGACAGTGAGTTTGACTTGGAGAACATTGTGGCTGCTGCACGAATTGCTGGAAAGAGAGTCAATGTTTTACTTCGGATCAATCCTGATGTGGATCCACAGGTCCATCCTTATGTTGCTACTGGTAATAAGAACTCGAAATTTGGAATCAGAAATGAGAAGCTGCAATGGTTTTTAGATACTGTAAAGGAGCACCCTAATGAGTTAAAGCTTGTAGGTGCTCACTGCCATCTTGGGTCAACAATTACCAAGGTAGACATATTCAGGGATGCTGCTTCTATTATGATCAAATACATTGACGAAATCCGAGCTCAGGGTTTTGAAGTTGATTATTTAAATATTGGTGGTGGACTTGGGATTGATTATTATCATTCCGATGTTGTCCTTCCTACACCAAGAGATCTCATTGACACTGTACGTGAGCTTGTTCTTTCCCGTAATCTCAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAACACCTGTTGCTTAGTTAACCGGGTGACAGGTGTCAAAACTAATGGATCCAAAAACTTTATTGTAATTGACGGAAGCATGGCTGAACTTATCCGTCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCTCCTGCCCCAGAAAATGCTGAGGTATCAACCTTTGATGTGGTTGGTCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTCCCAACTCCAGCCAAGGGTACTGGTCTGGTTGTTCATGATGCTGGTGCTTACTGCATGAGCATGGCATCAACCTACAATCTAAAGATGCGACCTCCAGAATATTGGGTTGAAGAAGATGGATCAGTGAGCAAAATAAGACATGGAGAGACATTTGAAGATCACATTCGGTTCTTTGAGGGCCTATGA 1476 0.4444 MQQGAMAGSHLFSYSPSIPKTSFIHSLSQNPFPQNLVVPLKLKAFIKPRVLRAVLSQNTAVENPKAKTHFKHCFTKSDDGFLYCEGTKVQEIMESVERRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPKRCIFNGNGKILDDLVLAAQEGVFINIDSEFDLENIVAAARIAGKRVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDTVKEHPNELKLVGAHCHLGSTITKVDIFRDAASIMIKYIDEIRAQGFEVDYLNIGGGLGIDYYHSDVVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPENAEVSTFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFEDHIRFFEGL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0258 491 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 129 147 IPR022653 -
Aev06g0258 491 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 60 488 - -
Aev06g0258 491 CDD PLPDE_III_DapDC 100 466 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 88 485 IPR009006 GO:0003824
Aev06g0258 491 Hamap Diaminopimelate decarboxylase [lysA]. 86 489 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 TIGRFAM lysA: diaminopimelate decarboxylase 76 485 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 SUPERFAMILY PLP-binding barrel 99 355 IPR029066 -
Aev06g0258 491 SUPERFAMILY Alanine racemase C-terminal domain-like 329 486 IPR009006 GO:0003824
Aev06g0258 491 PANTHER DIAMINOPIMELATE DECARBOXYLASE 60 488 - -
Aev06g0258 491 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 355 445 IPR022643 GO:0003824
Aev06g0258 491 PRINTS Diaminopimelate decarboxylase signature 372 390 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 PRINTS Diaminopimelate decarboxylase signature 147 164 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 PRINTS Diaminopimelate decarboxylase signature 235 244 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 PRINTS Diaminopimelate decarboxylase signature 455 477 IPR002986 GO:0008836|GO:0009089
Aev06g0258 491 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 298 313 IPR022657 -
Aev06g0258 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 344 363 IPR000183 GO:0003824
Aev06g0258 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 445 458 IPR000183 GO:0003824
Aev06g0258 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 262 275 IPR000183 GO:0003824
Aev06g0258 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 149 161 IPR000183 GO:0003824
Aev06g0258 491 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 129 147 IPR000183 GO:0003824
Aev06g0258 491 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 108 354 IPR022644 GO:0003824
Aev06g0258 491 Gene3D Alanine racemase 106 351 IPR029066 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0258 K01586 - gmx:100786832 866.3