Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0249 ATGAACAACTCCAACGGCATGATGTCCCCGTCTTCATCGGGCACAGCACAAACCCCTGGGCTGAAGACCTATTTCAAAACCCCCGAAGGACGATACAAGCTTCAATACGAGAAGACTCACCCTTCTGGTCTTCTTCATTACACTCATGGCAAAACCGTCACTCAGGTAACTCTGGCGCATCTCAAGGACAAGCCTGCGCCTTCCACCCCAACTGCTTCTTCTTCTAGTTTTAGTGCCAGCAGCGGAGTACGGTCTGCGGCAGCTAGATTGTTGGGAGGAAGCAATGGAAGCCGAGCACTAAGTTTTGTTGGAGGCAATGGTAGCAGCAAGAGCAATGGTGGAACCAGTAGGATTGGTTCACTCGGTGCCTCAAGTTCAAGTAACTCATTTGCTAATCCAAATTTTGATGGGAAAGGAACCTACTTGATCTTCAATGTCGGGGATGCAATTTTCATAAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCCGTGTGCCACGCATTTGATCCAGATGCCAAGGATGGGCATGATTTGCTTGTTGGCTTGAACACTGGTGATGTCTACTCCGTGTCACTGAGACAGCAATTACAGGATGTTGGCAAAAAGCTTGTCGGGGCCCAGCATTACAACAAAGACGGTTCAGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTGCCAGGAGGTGATGGTGCTTTTGTTGTTGCCCATTCTGATGGGAATTTGTACATATATGAAAAGAACAAAGATGGTGCTGGTGATTCTTCATTCCCAGTTGTCAAAGATCCAATGCAATTTTCTGTTGCACATGCACGTTATAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATTAACATGTTTTCTTTCTCATCTGATGGGGCATACTTAGCAACTGTTGGAAGAGATGGTTACTTACGAGTGTTTGATTACATAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGGGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACAGGAGGAGAAGATGATTTAGTTCAGGTTTGGAGTATGGATGATCGCAAAATTGTGGCATGGGGTGAGGGGCATAGCTCATGGGTAAGCGGGGTGGCTTTTGATTCGTATTGGTCATCACCAAATTCAAGTGACAATGGGGAGGCTGTTATGTATCGGTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTTCCCTTGAGGCGTCCTCCCGGTGGATCCCCAACTTACAGCACTGGAAGCCAGTCATCCCATTGGGACAGTGTTGTCCCACTGGGTACTTTGCAACCTGCTCCAAGAATGCGGGATGTTCCAAAAATCTCTCCATTGGTTGCTCACCGAGTGCATACCGAACCGCTCTCTGGCTTAATATTTACACAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCACATAAAAATCTGGACGAGACCTGGTGTTGCGGAGAGCCAGTCAAGCAACACTGAAACATTATTAGCTACCAGCCTCAAGGAGAAGCCTTCACTTACAAGCAAGATCAGCAATTCTAGCTACAAACAATGA 1635 0.4575 MNNSNGMMSPSSSGTAQTPGLKTYFKTPEGRYKLQYEKTHPSGLLHYTHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGSSKSNGGTSRIGSLGASSSSNSFANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDPDAKDGHDLLVGLNTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGAFVVAHSDGNLYIYEKNKDGAGDSSFPVVKDPMQFSVAHARYSKSNPIARWHICQGSINMFSFSSDGAYLATVGRDGYLRVFDYIKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMDDRKIVAWGEGHSSWVSGVAFDSYWSSPNSSDNGEAVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDSVVPLGTLQPAPRMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWTRPGVAESQSSNTETLLATSLKEKPSLTSKISNSSYKQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0249 544 MobiDBLite consensus disorder prediction 1 24 - -
Aev06g0249 544 Pfam WD domain, G-beta repeat 341 366 IPR001680 GO:0005515
Aev06g0249 544 Pfam WD domain, G-beta repeat 297 324 IPR001680 GO:0005515
Aev06g0249 544 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 2 541 - -
Aev06g0249 544 SMART WD40_4 327 366 IPR001680 GO:0005515
Aev06g0249 544 SMART WD40_4 470 507 IPR001680 GO:0005515
Aev06g0249 544 SMART WD40_4 285 324 IPR001680 GO:0005515
Aev06g0249 544 SMART WD40_4 210 256 IPR001680 GO:0005515
Aev06g0249 544 SMART WD40_4 369 421 IPR001680 GO:0005515
Aev06g0249 544 PANTHER WD REPEAT PROTEIN 2 541 - -
Aev06g0249 544 Gene3D - 11 516 IPR015943 GO:0005515
Aev06g0249 544 MobiDBLite consensus disorder prediction 1 22 - -
Aev06g0249 544 MobiDBLite consensus disorder prediction 104 127 - -
Aev06g0249 544 SUPERFAMILY WD40 repeat-like 148 507 IPR036322 GO:0005515
Aev06g0249 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 375 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0249 Aev-Chr6 1848422 1852840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0249 298 428 Miscellaneous Gene Families AT5G08390 22.901 1.41e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0249 K24741 - gmx:100782580 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0249 06 1848422 1852840 Aev06g0249 06 1848422 1852840 ECH