Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0024 ATGGAGATCGATAGAGCAACTAGGGTAACAAAACCACATGCTAACATGGGAATGAGAACCACGCAATTTCTCGTGCGAGAATTCGAGAACCGTTTCGTCCCCGCGCTGATAAACTGCGCAAGAATATCAGAGCTGAAGAAAATTCACGCTCAAATCGTTAAACTTTCACTATCGCAGAGCAACTTCCTCGTCACGAAAATGTTGGATTCATGCGATAAATTCGGCGACGTTGGTTATGCCACGTTGCTCTTCGAGCAACTGGTGAAGCCGAACGTGTTCTCGTATAACGCTATCATCAGGACCTTCGCTCGCAATCACCAACACCACCTGGCAATCACAGTGTTCAAGCGAATGCTGAGAGAACAAAGGGGATCAGATGAAGTTCCGATTTTGCCTGACAAATTCACGTTCCCGTTTGTGATAAGATCGTGTTCGGTGCTCTTGTGGCGAAGCCTTGGTAACCAGGTTCATGGGCATGTTTGGAAATTCGGGTTGAAGTCACATTCTGTGACGGAGAATGCACTCATTGATATGTTTACAAAATTTGGTGAATTGGGTAATGCACACAAGGTGTTTGAGGAAATGGGTGAGCAAGATGTTGTTTCTTGGAATGGCTTAATCTTTGGGCATGGTAGGTTGGGGCAGATGGAGAGTGCAAGGAAGCTGTTTGATGAAATGCCTTGTAGGACAGTTGTATCTTGGACGACTATGATAACAGGGTACTGTGGAATAGGGTGTTATGGTGATGCATTGGACATTTTCAGAAGGATGCAAATGGAGGGTATTGAGCCTGATGAAATTAGTGTTGTGGCTGTTTTGCCTGCTTGTGCACAGCTTGGTGCTCTTGAGGTTGGGAATTGGATTCGCATGTACTCGGATAGAAAAGGGTTCTTGCAGAAGAGTTGTGTGTGTAATGCACTGGTTGAGATGTATGCTAAGTGTGGCTGTATCGATGAAGCTCGGGGGTTGTTTGATCAGTTGGCTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGACTGGCCAATCATGGGAAAGCTCATGAAGCAATTGAGCTGTTTCAAGATATGCAGAAGGCAAAAGCCATTCCTAATGGGATTACTTTTCTTGGTGTTTTGTCAGCTTGCACTCATGCAGGCTTGTGGAATGAGGGGTTGAAATATTTTGATGTCATGAGGGTGGATTATAATATAGCACCAGAAATTGAGCACTATGGTTGCTTAGTTGATCTTCTAGGACGTTCCGGAAAGCTCGAGCAGGCTCTTGACACAATAGTGAAGATGCCAATGAAGCCAGATTCAAGGGTATGGAACTCTTTGTTGAGTTCTTGCAGGATTCATCGCAACCTCGAGTTCGCAATTGCTGCAATGGAACAACTTTTGGAGCTTGAGCCGGAAGAATCTGGGAACTATGTTTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAATGTGTATCAAATATTAGGAAACTCATTAGAAGCAAGGGGATAAAGAAAACCCCCGGGTGTAGCTCGATTGAGGTTAACAATGTCGTTCAAGAATTTGTATCAGATTCCACAACGGATTCGAGGAAGGGTATTGTGGAGATCTGGGACTTGTTTCATCTCTTATGCCCCATGAGGACCTTCTTCACTGCTGATTCCTGTAAAGAAGCCAACCCAAATGCCTTAAATCCACAGTCTTGGCTCCATATTGAAAGAGGGAAGCTTCCCAAACTGTCATCACAATCCTCTTCTTCATCAATAGAATCTCTAATCAAGGTCCCACAGCCACCTTTGCAGCCATTCTATAAGCCTATTGATTATGTGGAGGTTTTGGCTCAAATCCATGAAGAACTTGAGTCATGTCCTCCACAGGAGCGGTCGAGTCTGTTTTTGTTTCAATACCAGGTCTTTAGGGGGCTTGGGGAAGTTAAACTGATGCGTAGAAGCCTCCGGGGAGCTTGGCAGAGAGCCAACACCGTACATGAGAAGATCGTTTTTGGGGCATGGTTGAAGTATGAGAAGCAAGGAGAAGAGCTGATAGCTGACTTGTTAAGCACTTGTAGTAAATGTGCAAAGGAGTTTGGCCCCGTAGATGTAGCATCACATCTTCCATTTGATGGAAATTTATCTCATCTTCCATTTGATAGAACTGTAACTTCCCGGGAGAGAATTTTGACTGATGAGAATGGCGTATCGCAGAGTGTTATATTTACAATTGGAAATGAGAAGATAGTTTGTGATAGACAAAAGATTTCTGAGCTTTCACCACCGTTCCATGCAATGCTAAAAGGGTATTTCAGTGAGTCACTTTCTGAGACCATAGATTTGTCTGAAAACAATATATCAGCTTCAGGTATGAGGGCAATTAGTTATTTCAGTTTGGGTGGCAATTTACCTGAGCTCCCTCCAGATCTTTTGTTGGAGATATTAGTTTTTGCAAACAAGTATTGTTGTGAAAGACTGAAGGATGCTTGTGATCGAAGACTTGCATCCTTAGTTTCTTCCAAAGAGGATGCCGTGGAGCTCATGGAATATGCTCTTGATGAGAATTCAGCTGTCCTTGCTGCATCTTGTTTACAGGTCCTCTTATGTGATCTTCTAAACTGTTTGAATGACAATCGTGTGGTGGACATATTTATTTGTGCTAATAGGCAGCAGCTTGAAGTCATGGTTGGGCCAGGTTTATTCGCACTATTCTGTTTCTTAAGTGAAGTTTCTATACACCTGAATTCTAGTTCAGACACAACAGCCCATTTCCTGGAAAGGTTAGTTGAATTTTCTGAAAATGACAAGCAGAGATTGTTGGCTTTTCATCAATTGGGATGTGTAAGACTCTTGAGGAAAGAATATGATGAAGCGCGTCGACTATTTGAAAGGGCTATGAATCTAGGGCATATTTATTCCATTGCAGGTTTAGCTAGACTGGACTTTATAAAGGGTCAGAAGCTTTTATCTTATGAGAGGCTCAGCTCAGTCGTTGCCTCAGTTACTCCACTTGGATGGATGTACCAGGAAAGATCACTATATTGTGATGGTGATATAAGGTGGGAGGACCTTGAGAAAGCAAGTGATCTGGACCCTACTCTTACATACCCGTACATGTATAGGGCCGCATCTTTAATGAGGACACAGAATGCTCAAGCTGCACTGGCAGAAATCAATCGAATTCTTGGGTTCAGACTTTCATTAGAATGCTTAGAACTACGTTTCTTTATCCATCTGACTCTTGAGGACTACAAAGCAGCTCTCTGTGATATTCAAACAATTCTTACTCTGCGTCCCGAATATAGGATGTTTGAGGGGCGTGTTGCTGCATCCCAACTCTGCACTCTAGTTCGTGAGCATGTTGAACATTGGACAACAGCAGATTGTTGGGCACGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGATCTCTGTCTGTTATATATCAGATGCTCGAGACTGATGCAGCAAAAGGTGTTTTATACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAACTGTCCTGAGGCAGCCATGCGGAGTTTGCAATTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTCGTATATGAGGGGTGGATCTTGTATGATACAGGCCATTATGAGGAAGGACTACGGAAAGCTGAAGAGTCTATCAGTATCAAAAGGTCTTTTGAGGCCTTCTTCTTGAAGGCCTATGCATTGGCAGACTCTAGTCTAGATTCATCATGTGCTGCCACTGTTATCTCACTCCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATTTGCGCAAAGGTCAGGCACTAAACAATCTTGGAAGTGTTTTTGTTGACACTGGGAATTATGACTCAGCAGCTGATTGCTATATCAATGCCCTTAAAATCCGACATACCCGAGCCCATCAGGGTCTTGCTCGTGTGCATTTTCTCAAACAAGATAAGGCTGCTGCCTATAAAGAAATGACTGAACTCATTCAGAAGGCAAAAAACAATGCATCTGCCTATGAGAAGAGGTCTGAATACTGCGATCGTGAACTTGCTAAGGCAGATCTGGAGATGGTAACTAGATTAGATCCACTTCGGGTGTATCCTTATAGATATCGTGCTGCTGTATTAATGGACAACCGCAAGGAAGATGAAGCCATTGCTGAACTCTCTAGAGCTATCGCGTTTAAGGCCGATCTGCACCTCTTGCACCTGCGCGCAGCATTCCATGAGCACAAAGGGGATGTGTTGGGTGCACTAAGGGACTGTCGTGCTGCGCTCTCCGTGGACCCGAACCACCAAGAAATGTTGGAACTACACAGTCGGGTTAATAGCCATGAGCCATAA 4317 0.4383 MEIDRATRVTKPHANMGMRTTQFLVREFENRFVPALINCARISELKKIHAQIVKLSLSQSNFLVTKMLDSCDKFGDVGYATLLFEQLVKPNVFSYNAIIRTFARNHQHHLAITVFKRMLREQRGSDEVPILPDKFTFPFVIRSCSVLLWRSLGNQVHGHVWKFGLKSHSVTENALIDMFTKFGELGNAHKVFEEMGEQDVVSWNGLIFGHGRLGQMESARKLFDEMPCRTVVSWTTMITGYCGIGCYGDALDIFRRMQMEGIEPDEISVVAVLPACAQLGALEVGNWIRMYSDRKGFLQKSCVCNALVEMYAKCGCIDEARGLFDQLAEKDVISWSTMIGGLANHGKAHEAIELFQDMQKAKAIPNGITFLGVLSACTHAGLWNEGLKYFDVMRVDYNIAPEIEHYGCLVDLLGRSGKLEQALDTIVKMPMKPDSRVWNSLLSSCRIHRNLEFAIAAMEQLLELEPEESGNYVLLANIYAELGKWECVSNIRKLIRSKGIKKTPGCSSIEVNNVVQEFVSDSTTDSRKGIVEIWDLFHLLCPMRTFFTADSCKEANPNALNPQSWLHIERGKLPKLSSQSSSSSIESLIKVPQPPLQPFYKPIDYVEVLAQIHEELESCPPQERSSLFLFQYQVFRGLGEVKLMRRSLRGAWQRANTVHEKIVFGAWLKYEKQGEELIADLLSTCSKCAKEFGPVDVASHLPFDGNLSHLPFDRTVTSRERILTDENGVSQSVIFTIGNEKIVCDRQKISELSPPFHAMLKGYFSESLSETIDLSENNISASGMRAISYFSLGGNLPELPPDLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSAVLAASCLQVLLCDLLNCLNDNRVVDIFICANRQQLEVMVGPGLFALFCFLSEVSIHLNSSSDTTAHFLERLVEFSENDKQRLLAFHQLGCVRLLRKEYDEARRLFERAMNLGHIYSIAGLARLDFIKGQKLLSYERLSSVVASVTPLGWMYQERSLYCDGDIRWEDLEKASDLDPTLTYPYMYRAASLMRTQNAQAALAEINRILGFRLSLECLELRFFIHLTLEDYKAALCDIQTILTLRPEYRMFEGRVAASQLCTLVREHVEHWTTADCWARLYDCWSAVDDIGSLSVIYQMLETDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSLDSSCAATVISLLEDALKCPSDNLRKGQALNNLGSVFVDTGNYDSAADCYINALKIRHTRAHQGLARVHFLKQDKAAAYKEMTELIQKAKNNASAYEKRSEYCDRELAKADLEMVTRLDPLRVYPYRYRAAVLMDNRKEDEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLELHSRVNSHEP* 1439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0024 1438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 229 IPR002885 -
Aev06g0024 1438 SMART tpr_5 1357 1390 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 435 468 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 1153 1186 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 1392 1423 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 932 965 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 1061 1094 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 1261 1294 IPR019734 GO:0005515
Aev06g0024 1438 SMART tpr_5 1187 1220 IPR019734 GO:0005515
Aev06g0024 1438 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Aev06g0024 1438 TIGRFAM PPR: pentatricopeptide repeat domain 303 331 IPR002885 -
Aev06g0024 1438 TIGRFAM PPR: pentatricopeptide repeat domain 93 121 IPR002885 -
Aev06g0024 1438 TIGRFAM PPR: pentatricopeptide repeat domain 201 227 IPR002885 -
Aev06g0024 1438 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Aev06g0024 1438 Pfam E motif 448 510 IPR046848 -
Aev06g0024 1438 PANTHER ETO1-LIKE PROTEIN 1 543 1438 - -
Aev06g0024 1438 SUPERFAMILY TPR-like 303 961 IPR011990 GO:0005515
Aev06g0024 1438 SUPERFAMILY TPR-like 1244 1429 IPR011990 GO:0005515
Aev06g0024 1438 Coils Coil 941 961 - -
Aev06g0024 1438 Gene3D Potassium Channel Kv1.1; Chain A 719 861 IPR011333 -
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 159 285 IPR011990 GO:0005515
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 13 148 IPR011990 GO:0005515
Aev06g0024 1438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Aev06g0024 1438 Coils Coil 1306 1333 - -
Aev06g0024 1438 Pfam PPR repeat 173 198 IPR002885 -
Aev06g0024 1438 Pfam PPR repeat 201 228 IPR002885 -
Aev06g0024 1438 Pfam PPR repeat 405 430 IPR002885 -
Aev06g0024 1438 SUPERFAMILY TPR-like 933 1291 IPR011990 GO:0005515
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 909 1098 IPR011990 GO:0005515
Aev06g0024 1438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Aev06g0024 1438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 121 IPR002885 -
Aev06g0024 1438 Pfam PPR repeat family 230 277 IPR002885 -
Aev06g0024 1438 Pfam PPR repeat family 330 377 IPR002885 -
Aev06g0024 1438 SUPERFAMILY POZ domain 728 827 IPR011333 -
Aev06g0024 1438 Pfam Tetratricopeptide repeat 1263 1292 IPR019734 GO:0005515
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 301 529 IPR011990 GO:0005515
Aev06g0024 1438 PANTHER ETO1-RELATED 543 1438 IPR044631 GO:0010105
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 1150 1324 IPR011990 GO:0005515
Aev06g0024 1438 ProSiteProfiles TPR repeat profile. 1261 1294 IPR019734 GO:0005515
Aev06g0024 1438 Gene3D Tetratricopeptide repeat domain 1337 1437 IPR011990 GO:0005515
Aev06g0024 1438 Pfam Pentatricopeptide repeat domain 88 119 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0024 Aev-Chr6 205632 218818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0024 39 523 Glycoside Hydrolase AT3G49170 30.816 6.02e-73 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0024 - - aprc:113861325 1507.27