Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3502 ATGGACCCATCGTCGATCCCTCCCTCGCCACCACTTCCAGCTCCGGCAGACGACGACCTCTCCATCCCGGCCTACCCCGCCGCCGTGCCGTTCAGCTCTGACCCCACCAACAACCACCCTCCACCCATGCCCAACCCGAACCCCGCTCCCCCCCACCCTCCTTACGCCGAGATGATATACACAGCAATCGAGGCGCTGAAGGAGAAGGAAGGGTCGAGCAGGAGAGCAATAGCGAAGTACATAGAGCAAGTGTACAGGGACCAGCTCCCACCAACTCACTCCGCGTTACTGACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTCCACATGGTCAAGAAATCCTACATGCTCCCTAGATCTGCCTCCAACGCCGCCGCACCACCAAACCCCAACCCTTCCCCTTCTCCTTCCCCCAGGCCCAGAGGCCGACCTCGCAAGGCCCAGGCCCAATCTCACCCTCTCCCAGCTCCAAATGGCACCAACGCCCTCCCGCAGCAACAGCAGAATGCCGAGCCTGTCTGGGCCGCGCTTGGGCTCGCGGACGAGCCTGCTCCACAACCTGCGGGGTCTGAGGTCAAGAGGGGACCGGGCCGTCCGAAGAAGAACGGGCCTGGTGGAGGAGCTGCGGGGACATCGGCTCAATCTACGCCGCTGGTTAAGACGCCGGGAAGGAGAGGGCGTCCTCCGGGCTCAAAATCGAAGAAGCGGCCAGGACGTCCTCCGAAGTTTGAAGGTGCCGGCGCTGTTGCTGCACCTGTGACTGCGGAGTCTGCGTCTATTGGGCCTAAGAGGCGCCCGGGCCGACCTCCCAAGAACCCCCAACAAGCGACTCCTGTGAATTTTGCTCCTGCTGACGCTGCTGTCGTGCCGGCGGTGACGACTGTTCCTGCCGGCGGGGATATTGCTGGGGTTGGAGGTGCAAGGCCCAGGGGCCGGCCCAAGAGGTTTGCAGATGAGGTGATGCCTTCTGGCCGCGGTAGGGGACGGGGCCGTGGCCGTGGCCGTGGACGAGGTCGTGGAATGTGGCTCGGAGGAGGAGGAGAAGGAGGACGTGGACGCGGGCGCGGACGTGGCACCGGAAGGCCCGTGGGCCGCCCAAGGAAGGGAACAACTCCTGCTAGCACATCACGAAATGCTGGTAATGAAGAGCTCAAGAGGAAACTCGAACATTTTCAATCAAAAGTGAGGGAATCACTTGCTGCACTTAAGCCTCATTTTAACCATGAAAGTCCAGTCACTGCACTCGCAGCGATTCAAGAGTTGGAAGTGCTTGGATCTATGGACCTCGATGCGCCACTAGTGGATGAAACTGTTCCTGAGCCACAGCAGCCACCACCACAACAGCTGCTGCCGCCGCAACAGCTAGAAGTGCAGCAGCCACCGTCGCCACCACAACTGCACCTGCAGCAGCTGCAACCACCTCAGCAACATGTGTTTCATCAGCAGCAGTTCCCCCAGTTTAATCTGCCGCAGTTCCAGCAGTACCAGCAAGCACCGACGCAGCAGCAACTGTTCCATCCGTAG 1530 0.6092 MDPSSIPPSPPLPAPADDDLSIPAYPAAVPFSSDPTNNHPPPMPNPNPAPPHPPYAEMIYTAIEALKEKEGSSRRAIAKYIEQVYRDQLPPTHSALLTHHLNRLKNNGMLHMVKKSYMLPRSASNAAAPPNPNPSPSPSPRPRGRPRKAQAQSHPLPAPNGTNALPQQQQNAEPVWAALGLADEPAPQPAGSEVKRGPGRPKKNGPGGGAAGTSAQSTPLVKTPGRRGRPPGSKSKKRPGRPPKFEGAGAVAAPVTAESASIGPKRRPGRPPKNPQQATPVNFAPADAAVVPAVTTVPAGGDIAGVGGARPRGRPKRFADEVMPSGRGRGRGRGRGRGRGRGMWLGGGGEGGRGRGRGRGTGRPVGRPRKGTTPASTSRNAGNEELKRKLEHFQSKVRESLAALKPHFNHESPVTALAAIQELEVLGSMDLDAPLVDETVPEPQQPPPQQLLPPQQLEVQQPPSPPQLHLQQLQPPQQHVFHQQQFPQFNLPQFQQYQQAPTQQQLFHP* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3502 509 Pfam linker histone H1 and H5 family 52 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev05g3502 509 SUPERFAMILY "Winged helix" DNA-binding domain 46 124 IPR036390 -
Aev05g3502 509 Coils Coil 383 403 - -
Aev05g3502 509 Gene3D - 48 131 IPR036388 -
Aev05g3502 509 MobiDBLite consensus disorder prediction 35 55 - -
Aev05g3502 509 SMART AT_hook_2 309 321 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 237 248 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 195 207 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 224 236 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 362 374 IPR017956 GO:0003677
Aev05g3502 509 SMART AT_hook_2 265 277 IPR017956 GO:0003677
Aev05g3502 509 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aev05g3502 509 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aev05g3502 509 PRINTS Histone H5 signature 135 149 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aev05g3502 509 PRINTS Histone H5 signature 199 218 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aev05g3502 509 PRINTS AT-hook-like domain signature 307 317 IPR017956 GO:0003677
Aev05g3502 509 PRINTS AT-hook-like domain signature 263 274 IPR017956 GO:0003677
Aev05g3502 509 PRINTS AT-hook-like domain signature 195 205 IPR017956 GO:0003677
Aev05g3502 509 MobiDBLite consensus disorder prediction 1 55 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 127 143 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 434 485 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 298 392 - -
Aev05g3502 509 SMART h15plus2 49 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev05g3502 509 MobiDBLite consensus disorder prediction 440 461 - -
Aev05g3502 509 PANTHER HISTONE H1-LIKE 36 338 - -
Aev05g3502 509 PANTHER HISTONE H1-LIKE 234 444 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 155 174 - -
Aev05g3502 509 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev05g3502 509 MobiDBLite consensus disorder prediction 313 328 - -
Aev05g3502 509 PANTHER HISTONE H1 234 444 - -
Aev05g3502 509 PANTHER HISTONE H1 36 338 - -
Aev05g3502 509 CDD H15 55 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev05g3502 509 MobiDBLite consensus disorder prediction 1 17 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 462 485 - -
Aev05g3502 509 MobiDBLite consensus disorder prediction 122 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3502 Aev-Chr5 34247997 34253032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3502 - - vun:114182142 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3502 05 34247997 34253032 Aev05g3502 05 34247997 34253032 ECH