Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2972 ATGGATGTGGATGGTAGCAACAAGCGCGTGTTCCACCGACTAGGTGGACCCGCAGGGGACGCGAAGCATCAGAAAGTATGCTATCACTGGCAAGCTGGCAAATGCAATCGTCATCCGTGCCCTTTTCTCCATAGCGAATTGCCACCTCCTAATGTTAATGGCACATCTTCGAAGAGACCTTATTCCTCTACTGATAATTCCGGGTTTTCGGGTAATCGTAGGAACCCTAATTTCAACAATAAGTGGGGGCGTGGCGGCAGCAGTGGAGGTGGTGCTGGTGCTTCTGGAGTGGGTGGTGGTAATAGGAGTGTAGTTAGGAAGGCTGATAAAGTTGTGAGTGGAATTGCCTTTCCCTCTGGCTCGGATAAGCTTTATACTGGAGGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGCATGCCTAATTTTGTTAAGGTCTGGAACACCCAAAATTCAATGGAACTAAGTCTAAATGGCCCTGTTGGACAAGTTTATGCGCTAGTTGTGAATAATGACATGCTCTTTGCTGGTACACAGGATGGATCTATATTAGCATGGAAATTCAATGTAGTGTCTAATTGCTTTGAGCCAGCTGCATCACTTAAAGGTCATTCCCGGGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAACCTTGAAACTTTGCAGTGTTTACAGACACTAACAGAGCACACATCGGTTGTGATGTCTGTCCTCTGCTGGGATCAGTTCCTTATATCTTGTTCATTGGACAAAACTGTGAAGGTGTGGTTTGCTGCGGAAAGTGGGAACTTGGAAGTGACATATACTCATAATGAAGAACATGGAATTCTTACCCTCTGTGGGATGCATGATGCACAAGGCAAGCCCATTTTGCTGTGCTCCTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATTCACTAAACAAGAGGTGCGGGCAATTCAGGTAGGGCCTAACGGCATATTCTTCACCGGTGACGGAACCGGTCAAGTGAGAGTGTGGAATTGGATAGCAGAGCCGACCCCTTCCACCCAATAA 1188 0.4621 MDVDGSNKRVFHRLGGPAGDAKHQKVCYHWQAGKCNRHPCPFLHSELPPPNVNGTSSKRPYSSTDNSGFSGNRRNPNFNNKWGRGGSSGGGAGASGVGGGNRSVVRKADKVVSGIAFPSGSDKLYTGGTDETVRVWDCQSGKCIAVINLGGEVGCMISEGPWVFVGMPNFVKVWNTQNSMELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFNVVSNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWFAAESGNLEVTYTHNEEHGILTLCGMHDAQGKPILLCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIQVGPNGIFFTGDGTGQVRVWNWIAEPTPSTQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2972 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 261 - -
Aev05g2972 395 MobiDBLite consensus disorder prediction 1 20 - -
Aev05g2972 395 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 110 - -
Aev05g2972 395 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 109 391 - -
Aev05g2972 395 Gene3D - 97 183 IPR015943 GO:0005515
Aev05g2972 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 267 IPR001680 GO:0005515
Aev05g2972 395 PANTHER - 1 110 IPR044715 -
Aev05g2972 395 PANTHER - 109 391 IPR044715 -
Aev05g2972 395 SUPERFAMILY WD40 repeat-like 108 386 IPR036322 GO:0005515
Aev05g2972 395 SMART WD40_4 302 345 IPR001680 GO:0005515
Aev05g2972 395 SMART WD40_4 261 298 IPR001680 GO:0005515
Aev05g2972 395 SMART WD40_4 348 385 IPR001680 GO:0005515
Aev05g2972 395 SMART WD40_4 221 258 IPR001680 GO:0005515
Aev05g2972 395 SMART WD40_4 98 137 IPR001680 GO:0005515
Aev05g2972 395 SMART WD40_4 177 214 IPR001680 GO:0005515
Aev05g2972 395 MobiDBLite consensus disorder prediction 51 84 - -
Aev05g2972 395 Gene3D - 5 55 - -
Aev05g2972 395 Pfam WD domain, G-beta repeat 224 258 IPR001680 GO:0005515
Aev05g2972 395 Pfam WD domain, G-beta repeat 112 137 IPR001680 GO:0005515
Aev05g2972 395 Pfam WD domain, G-beta repeat 263 297 IPR001680 GO:0005515
Aev05g2972 395 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 137 - -
Aev05g2972 395 MobiDBLite consensus disorder prediction 1 19 - -
Aev05g2972 395 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Aev05g2972 395 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Aev05g2972 395 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Aev05g2972 395 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Aev05g2972 395 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Aev05g2972 395 Gene3D - 184 394 IPR015943 GO:0005515
Aev05g2972 395 MobiDBLite consensus disorder prediction 51 100 - -
Aev05g2972 395 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2972 Aev-Chr5 30421256 30424314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2972 200 385 Miscellaneous Gene Families AT5G08390 26.768 5.20e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2972 - - gmx:100792089 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2972 05 30421256 30424314 Aev05g2972 05 30421256 30424314 ECH