Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2887 ATGGCTCCTCCTAGAGGTCGTGGTGGTGGTGGTGGAGGTTTCAGGGGTGGTAGAGGAGGGGACAGAGGTGGAGGGAGAGGTGGAGGTAGAGGTGGTGGAGGAAGAGGTACCCCATTCAAAGCTCGTGGTGGTGGAAGAGGTGGAGGAGGAGGCAGAGGTGGACGTGGAGGAGGTAGGGGCGGTGGCCGAGGTGGAATGAAGGGAGGGAGCAAGGTTGTGGTTGAGCCTCACAGACATGGAGGGATTTTCATTGCGAAGGGCAAAGAAGATGCACTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGATCACTGTGCAGAAAGAAGATGGCACAAAGGATGAGTACAGGGTTTGGAACCCTTTCCGCTCCAAGCTTGCCGCAGCCATCCTTGGTGGTGTTGACAACATTTGGATTAAACCTGGAGCCCGAGTCCTTTACCTGGGAGCTGCTTCTGGGACAACTGTGTCTCATGTGTCTGACATTGTTGGTCCAACAGGGGTTGTCTATGCTGTTGAATTCTCTCATCGAAGTGGGCGTGACTTGGTCAACATGGCTAAGAAGCGTACCAATGTTATTCCCATTATTGAAGATGCTAGACATCCGGCCAAGTACAGGATGTTGGTTGGAATGGTAGATGTGATTTTTTCTGATGTAGCTCAGCCTGATCAGGCAAGAATCTTGGGGTTGAATGCATCATATTATCTCAAATCAGGAGGACATTTTGTTATATCAATCAAGGCGAACTGCATCGATTCGACAGTACCTGCAGAATCGGTGTTTGCGAGTGAAGTGAACAAGTTGAAGGCAGATCAGTTCAAACCTTTCGAGCAAGTGACACTTGAACCATTTGAGCGTGACCATGCTTGTGTTGTTGGTGGATACAGAGTGCCCAAGAAGAAAAAGGATACTGAGTAG 933 0.492 MAPPRGRGGGGGGFRGGRGGDRGGGRGGGRGGGGRGTPFKARGGGRGGGGGRGGRGGGRGGGRGGMKGGSKVVVEPHRHGGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQKEDGTKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKSGGHFVISIKANCIDSTVPAESVFASEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRVPKKKKDTE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2887 310 MobiDBLite consensus disorder prediction 1 72 - -
Aev05g2887 310 Gene3D Vaccinia Virus protein VP39 125 302 IPR029063 -
Aev05g2887 310 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 308 - -
Aev05g2887 310 Gene3D Phosphorylase Kinase; domain 1 69 124 - -
Aev05g2887 310 ProSitePatterns Fibrillarin signature. 172 186 IPR020813 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 88 301 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 SMART Fibrillarin_2 74 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 74 301 IPR029063 -
Aev05g2887 310 Pfam Fibrillarin 74 301 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 308 - -
Aev05g2887 310 PIRSF Nop17p 16 304 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 92 111 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 120 139 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 172 189 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 197 226 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 147 168 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 279 300 IPR000692 GO:0003723|GO:0006364|GO:0008168
Aev05g2887 310 PRINTS Fibrillarin signature 227 256 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2887 Aev-Chr5 29720022 29722472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2887 K14563 - gmx:100814656 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2887 05 29720022 29722472 Aev05g2887 05 29720022 29722472 ECH