Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g1341 ATGCGTGGAATTGCAATCGAGACAGGTTTGAAGAATCTAATGGCTCAGTATCAAAACAACCCTCCTCAGCAGCAATCACCAAACACACAACCACATCTCATCGAAGGTCTAAGTTCAGTGAAATCGTATTTGTACAACTACGGATACTTACTGAGCCAAAGCTACCCTCCATCTTTCACAGATACCCTGGATGATGGTACTAAACAAGCCATCATGAATTACCAGAGCGCCTTCAACCTAAATATTACCGGCTTCCCAGACAAGGCCACTATCGAGAAGATGCTACAGCTACGATGCGGTGTTCCCGACATGAACTTACGATACACCCTCGACCACACAAACCGAGTAGTTTCATGGCCTAAAGGGAAAAATTGGTCCCCTAACCCAAGCAGCCTCACCTACGGTTTTAATTCGTCAATCAGCAATGCTAGTGCCGATGCGTTCAGAGGTTTATTCAATGATTGGTCAAACGCCACAGGGGTGAACCTCACGGAGGTACATTTTGACCATGCCCAAATCAAGGTTACGTTCTACGATTATTTCATCAGCGACTATTCCAGTAGAATGGAGATTGCGGGGAGCACCATTATACAAAGGGTACCCCAATCATCAGGTAATTATAATTATGGTTATAATTATAATGTTGCTGGGATCATAATTCTTGAGAATAGACAGAAATGGGATTTGCCAAGAGGGTTGAACTCGGTGAATGTGGTGATGCACCAGATTGGACATATTCTAGGGCTTGAACACTCCCTCGACCAGGAGTCCATTATGCACCCTAGCTTTGTTAACCCCCAGCAACAAACGAAGCAGCTCTCATACAGTGATAAGCAGCAGATCAGCCGATTATCCTCTGGCGGCGGTTCTCTGATCTCAGACAAATATCAGCCTGTTTGCGGCGGCAGTGGGTCCAGATGGGGGCTACTTGTTGCCACATTGTCAATTGGATTCTCTTGCATGGCTCTCTATTATTAA 978 0.454 MRGIAIETGLKNLMAQYQNNPPQQQSPNTQPHLIEGLSSVKSYLYNYGYLLSQSYPPSFTDTLDDGTKQAIMNYQSAFNLNITGFPDKATIEKMLQLRCGVPDMNLRYTLDHTNRVVSWPKGKNWSPNPSSLTYGFNSSISNASADAFRGLFNDWSNATGVNLTEVHFDHAQIKVTFYDYFISDYSSRMEIAGSTIIQRVPQSSGNYNYGYNYNVAGIIILENRQKWDLPRGLNSVNVVMHQIGHILGLEHSLDQESIMHPSFVNPQQQTKQLSYSDKQQISRLSSGGGSLISDKYQPVCGGSGSRWGLLVATLSIGFSCMALYY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g1341 325 PANTHER MATRIX METALLOPROTEINASE 34 286 - -
Aev05g1341 325 SMART col_5 121 290 IPR006026 GO:0006508|GO:0008237|GO:0008270
Aev05g1341 325 Pfam Putative peptidoglycan binding domain 37 94 IPR002477 -
Aev05g1341 325 PANTHER MATRIXIN PROTEIN 34 286 - -
Aev05g1341 325 PRINTS Matrixin signature 148 163 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aev05g1341 325 PRINTS Matrixin signature 238 263 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aev05g1341 325 PRINTS Matrixin signature 94 107 IPR021190 GO:0004222|GO:0006508|GO:0008270
Aev05g1341 325 SUPERFAMILY PGBD-like 36 104 IPR036365 -
Aev05g1341 325 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 131 283 - -
Aev05g1341 325 Pfam Matrixin 131 284 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Aev05g1341 325 Gene3D Collagenase (Catalytic Domain) 30 286 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g1341 Aev-Chr5 9588655 9589632 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g1341 - - gmx:100786104 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g1341 05 9588655 9589632 Aev05g1341 05 9588655 9589632 ECH